From aed5fabf55c9cc608686f564f5ced0617a64d62b Mon Sep 17 00:00:00 2001 From: Polina Lakrisenko Date: Fri, 21 Nov 2025 15:12:32 +0100 Subject: [PATCH] add Blasi visualization spec --- .../Blasi_CellSystems2016.yaml | 3 +++ ...zationSpecification_Blasi_CellSystems2016.tsv | 16 ++++++++++++++++ 2 files changed, 19 insertions(+) create mode 100644 Benchmark-Models/Blasi_CellSystems2016/visualizationSpecification_Blasi_CellSystems2016.tsv diff --git a/Benchmark-Models/Blasi_CellSystems2016/Blasi_CellSystems2016.yaml b/Benchmark-Models/Blasi_CellSystems2016/Blasi_CellSystems2016.yaml index cbdbaf4..868492a 100644 --- a/Benchmark-Models/Blasi_CellSystems2016/Blasi_CellSystems2016.yaml +++ b/Benchmark-Models/Blasi_CellSystems2016/Blasi_CellSystems2016.yaml @@ -9,3 +9,6 @@ problems: - observables_Blasi_CellSystems2016.tsv sbml_files: - model_Blasi_CellSystems2016.xml + visualization_files: + - visualizationSpecification_Blasi_CellSystems2016.tsv + diff --git a/Benchmark-Models/Blasi_CellSystems2016/visualizationSpecification_Blasi_CellSystems2016.tsv b/Benchmark-Models/Blasi_CellSystems2016/visualizationSpecification_Blasi_CellSystems2016.tsv new file mode 100644 index 0000000..83b5f57 --- /dev/null +++ b/Benchmark-Models/Blasi_CellSystems2016/visualizationSpecification_Blasi_CellSystems2016.tsv @@ -0,0 +1,16 @@ +plotId plotTypeData plotName plotTypeSimulation xLabel xScale yLabel yScale legendEntry yValues xValues xOffset yOffset +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 0ac observable_0ac time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5 observable_k5 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K8 observable_k8 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K12 observable_k12 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K16 observable_k16 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5K8 observable_k5k8 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5K12 observable_k5k12 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K8K12 observable_k8k12 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K8K16 observable_k8k16 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K12K16 observable_k12k16 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5K8K12 observable_k5k8k12 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5K8K16 observable_k5k8k16 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K5K12K16 observable_k5k12k16 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 K8K12K16 observable_k8k12k16 time 0 0 +plot1 MeanAndSD BarPlot acetylation motifs lin log$_{10}$ motif abundance x$_m$ [a. u.] log10 4ac observable_4ac time 0 0