From 66fb932f62029578dce70a209c23caaebe481b89 Mon Sep 17 00:00:00 2001
From: "Michael R. Crusoe" <1330696+mr-c@users.noreply.github.com>
Date: Thu, 19 Apr 2018 20:29:05 +0300
Subject: [PATCH] Replace /var/spool/cwl with portable reference

`/var/spool/cwl` is not part of the CWL v1.x standards. See https://github.com/common-workflow-language/common-workflow-language/issues/674 for a discussion.
---
 testsuite/cwlTools/function_qiime_pick_open_reference_otus.cwl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/testsuite/cwlTools/function_qiime_pick_open_reference_otus.cwl b/testsuite/cwlTools/function_qiime_pick_open_reference_otus.cwl
index d3bf1ef..d4b53d1 100644
--- a/testsuite/cwlTools/function_qiime_pick_open_reference_otus.cwl
+++ b/testsuite/cwlTools/function_qiime_pick_open_reference_otus.cwl
@@ -12,7 +12,7 @@ hints:
 arguments:
 - position: 9
   shellQuote: false
-  valueFrom: -f -o /var/spool/cwl
+  valueFrom: -f -o $(runtime.outdir)
 inputs:
   input_splitted_libraries:
     inputBinding: