Result file without data

[BiodivGenomic]

Hello,
I ran LtrDetector on my fasta file with the following command:
LtrDetector -fasta /path/to/my/data/LTR_retriever -destDir /path/to/results/LTRdetector -nThreads 4
After a while, I got results as a bed file, as expected. However, this file only contain the columns' names, repeated 839062 x (for as lines as LTR found ?):

SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End
SeqID Retrotransposon Left_LTR Right_LTR Left_TSD Right_TSD Polypurine Tract TG CA
Start End Start End Start End ID Start End Start End Start End Strand Purine% Start End

I believe it is related with some writing functions... how could I fix that to get the actual results ?
Thanks in advance !

[hani-girgis]

Hi,

Thanks for your interest in LtrDetector. Do the files under the input directory have ".fa" extension?

Best,

Hani Zakaria

[BiodivGenomic]

Hi,
indeed, the input genome file is a multi-sequences fasta file with .fa as extension.

[hani-girgis]

Hello,

I would like to reproduce the error on my side. Is it possible to email me (hzgirgis at buffalo dot edu) the input file(s) or perhaps provide a link to where I can download them?

Best,

Hani Zakaria