update bun.lock. delete extraneous files #5345

Job	Run time
build-and-check	3m 0s
test-common	40s
test-packages/billing	39s
test-integration-packages/agent-runtime	45s
test-integration-cli	52s
test-web	44s
test-.agents	41s
test-integration-common	45s
test-packages/internal	45s
test-sdk	37s
test-packages/agent-runtime	1m 18s
test-integration-sdk	41s
test-integration-.agents	46s
test-integration-web	39s
test-cli	1m 17s
test-integration-packages/internal	42s
test-integration-packages/billing	38s
	15m 29s

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