cli: Pause timer when using ask user tool #5348

Job	Run time
build-and-check	2m 41s
test-packages/agent-runtime	50s
test-web	46s
test-integration-packages/internal	41s
test-integration-.agents	39s
test-integration-cli	41s
test-integration-common	39s
test-.agents	40s
test-sdk	44s
test-packages/billing	41s
test-integration-packages/agent-runtime	39s
test-cli	1m 12s
test-integration-packages/billing	39s
test-integration-web	40s
test-packages/internal	48s
test-integration-sdk	42s
test-common	40s
	14m 22s

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