[Feature]:

[tseemann]

Feature Type

New output format

Problem Description

Could you use the gene model to annotate more than just the CSS itself?

See https://www.ddbj.nig.ac.jp/ddbj/features-e.html#regulatory

attenuator –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”attenuator”
CAAT_signal –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”CAAT_signal”
enhancer –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”enhancer”
GC_signal –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”GC_signal”
-35_signal –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”minus_35_signal”
-10_signal –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”minus_10_signal”
polyA_signal –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”polyA_signal_sequence”
promoter –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”promoter”
RBS –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”ribosome_binding_site”
TATA_signal –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”TATA_box”
terminator –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”terminator”
misc_signal –> regulatory feature with /[regulatory_class](https://www.ddbj.nig.ac.jp/ddbj/qualifiers-e.html#regulatory_class)=”other”

Proposed Solution

Annotate as much as possilbe :)

Use Case

For Bakta and Prokka

Alternatives Considered

No response

Examples

Priority

Low (nice to have)

Implementation Ideas

No response

Additional Context

No response

Checklist

• I have searched existing issues to ensure this feature hasn't been requested before
• I have checked the documentation to ensure this feature doesn't already exist
• I understand this is a voluntary open-source project and features are implemented as time allows

[tseemann]

PS. i added a feature desc but the Issue heading doesn't have it