Gene embedding extraction

[JunxiFeng]

Hi Xin,

Hope you are doing well. I am wondering if it's possible to extract the gene/atac embedding from GET. Thanks!

[flysheeeep]

Hi, junxi,
I've tried to extract the embedding of my dataset with GET model, as well, have you figured it out?

[JunxiFeng]

Hi,

Yes! I have extracted the gene embedding after the encoder layers!

[flysheeeep]

hi, @JunxiFeng that's great, could u please help me about this issue about choose the suitable checkpoints #57 (comment)

[JunxiFeng]

hi feiyang, I didn't use the checkpoints, as I trained the GET model from scratch using mouse dataset instead!

[flysheeeep]

Got it, thanks! @JunxiFeng
By the way, could you please share the approximate memory usage and time consumption of your pretraining process?

Best,
Feiyang