ci: Add unit test #93
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| jobs: | |
| ################################################################################################ | |
| # Formatting: Check formatting using Pixi | |
| ################################################################################################ | |
| format: | |
| if: github.event.pull_request.merged != true || github.ref != 'refs/heads/main' | |
| permissions: | |
| contents: read # for actions/checkout to fetch code | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Pixi | |
| uses: prefix-dev/setup-pixi@v0.8.3 | |
| with: | |
| environments: format | |
| pixi-version: v0.43.3 | |
| cache: false | |
| locked: false | |
| - name: Run snakefmt | |
| run: pixi run -e format snakefmt workflow/Snakefile workflow/rules/*.smk --check --diff | |
| ################################################################################################ | |
| # Testing: Run tests using Pixi | |
| ################################################################################################ | |
| test: | |
| if: github.event.pull_request.merged != true || github.ref != 'refs/heads/main' | |
| strategy: | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install Pixi | |
| uses: prefix-dev/setup-pixi@v0.8.3 | |
| with: | |
| environments: test | |
| pixi-version: v0.43.3 | |
| cache: false | |
| locked: false | |
| - name: Set strict conda channel priority | |
| run: conda config --set channel_priority strict | |
| - name: Run examples | |
| run: pixi run -e test env --chdir ./examples/ ./make_dags.sh | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.CI_TOKEN }} |