diff --git a/sharepathway/out2html.py b/sharepathway/out2html.py
index 69c2f77..b2ad87a 100644
--- a/sharepathway/out2html.py
+++ b/sharepathway/out2html.py
@@ -22,6 +22,7 @@ def out2html(*args, **kwargs):
rr = kwargs.get('ratio',args[7])
outfilename = kwargs.get('output', args[8])
pwid2name = dict(kwargs.get('pwid2name', args[9]))
+ species = kwargs.get('species', args[10])
snum = GenesMat.shape[1]
pnum = pathwayMat.shape[1]
gnum = GenesMat.shape[0]
@@ -102,7 +103,7 @@ def out2html(*args, **kwargs):
-""" %('hsa',pnum,snum,str(genelistscount),gnum, localtime))
+""" %(species,pnum,snum,str(genelistscount),gnum, localtime))
outfile.write("""
diff --git a/sharepathway/run.py b/sharepathway/run.py
index e5ccae7..bd34979 100644
--- a/sharepathway/run.py
+++ b/sharepathway/run.py
@@ -54,6 +54,6 @@ def Run(*args, **kwargs):
# parse KEGG into matrix
[Pathways, pathwaycount, pathwayMat] = linkpath2mat(Genes, data)
enrich = enrichment(GenesMat, pathwayMat)
- result = out2html(GenesMat, pathwayMat,enrich,Genes,Pathways,genelists,pathwaycount,ratio,fileout, pwid2name)
+ result = out2html(GenesMat, pathwayMat,enrich,Genes,Pathways,genelists,pathwaycount,ratio,fileout, pwid2name, species)
return(result)