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1 parent 326893b commit ad92021Copy full SHA for ad92021
main/como/rnaseq_preprocess.py
@@ -459,7 +459,6 @@ async def _create_config_df( # noqa: C901
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fragment_label = f"{context_name}_{label}_fragment_size.txt"
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frag_paths = [p for p in aux_lookup["fragment"].values() if p.name == fragment_label]
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- print(f"HERE: {prep}")
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if not frag_paths and prep.lower() != RNAType.TRNA.value.lower():
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logger.warning(f"No fragment file for '{label}'; defaulting to 100 bp (needed for zFPKM).")
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mean_frag = 100.0
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