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Warning on undefined parameted for -extend_annexa parameter but it seems to work anyway, to check ?!
WARN: Found unexpected parameters:
* --full: true
* --operation: union
* --bambu_threshold: 0.2
* --tfkmers_threshold: 0.2
* --withGeneCoverage: false
* --enable_conda: true
* --maxCpu: 8
* --tfkmers_model: /groups/dog/mlorthiois/TransforKmers/models/hsa_5prime_bert_6_12-512/best
* --tfkmers_tokenizer: /groups/dog/mlorthiois/TransforKmers/config/tokenizer_k6_512
* --skip_annexa: false
* --filter: true
- Ignore this warning: params.schema_ignore_params = "full,operation,bambu_threshold,tfkmers_threshold,withGeneCoverage,enable_conda,maxCpu,tfkmers_mode
l,tfkmers_tokenizer,skip_annexa,filter"
WARN: Access to undefined parameter `extend_annexa` -- Initialise it to a default value eg. `params.extend_annexa = some_value`
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