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lines changed Original file line number Diff line number Diff line change @@ -22,10 +22,10 @@ jobs:
2222 - name : Set up Python
2323 uses : actions/setup-python@v4
2424 with :
25- python-version : 3.x
25+ python-version : 3.11
2626
2727 - name : Install dependencies
28- run : pip install requests pandas google-cloud-bigquery pyarrow nbformat
28+ run : pip install requests==2.31.0 pandas==2.1.1 google-cloud-bigquery==3.12.0 pyarrow==13.0.0 nbformat==5.9.2
2929
3030 - name : Authorize Google Cloud
3131 uses : google-github-actions/auth@v1
8888 run : |
8989 for nb in part1_prerequisites part2_searching_basics part3_exploring_cohorts; do
9090 docker run -d --name colab -v "$(pwd):/content" -e GOOGLE_APPLICATION_CREDENTIALS="${{ env.GOOGLE_APPLICATION_CREDENTIALS }}" imagingdatacommons/idc-testing-colab:latest
91- docker exec -t colab /bin/bash -c "pip install papermill"
91+ docker exec -t colab /bin/bash -c "pip install papermill==2.4.0 "
9292 docker exec -t colab /bin/bash -c "set -o xtrace && set -o errexit && set -o pipefail && set -o nounset && set +o errexit && cd content/ && papermill /content/notebooks/getting_started/${nb}.ipynb /content/test/outputs/${nb}_papermill_output.ipynb && set -o errexit && ls -A"
9393 #docker exec -t colab /bin/bash -c "jupyter nbconvert --to html --ExtractOutputPreprocessor.enabled=False /content/test/outputs/output_${nb}.ipynb"
9494 docker stop colab
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