added dictionary queries

Author: fedorov

notebooks/collections_demos/TotalSegmentator_CT_Segmentations_features_extraction.ipynb

@@ -1566,6 +1566,64 @@
         }
       ]
     },
+    {
+      "cell_type": "markdown",
+      "source": [
+        "Features dictionary: https://docs.google.com/spreadsheets/d/1GbNv0yX06okLNtjxPjP1P9g_JrH0wDNqdUQsUBEFtPs/edit?usp=sharing\n",
+        "\n",
+        "Extracted using\n",
+        "\n",
+        "```sql\n",
+        "SELECT\n",
+        "  DISTINCT(Quantity.CodeMeaning) Quantity_CodeMeaning,\n",
+        "  Quantity.CodeValue Quantity_CodeValue,\n",
+        "  Quantity.CodingSchemeDesignator Quantity_CodingSchemeDesignator,\n",
+        "  qm.Units.CodeMeaning Units_CodeMeaning,\n",
+        "  qm.Units.CodeValue Units_CodeValue,\n",
+        "  qm.Units.CodingSchemeDesignator Units_CodingSchemeDesignator,\n",
+        "FROM\n",
+        "  `bigquery-public-data.idc_v18.quantitative_measurements` qm\n",
+        "JOIN\n",
+        "  `bigquery-public-data.idc_v18.dicom_all` da\n",
+        "ON\n",
+        "  qm.segmentationInstanceUID=da.SOPInstanceUID\n",
+        "WHERE\n",
+        "  analysis_result_id IN ('TotalSegmentator-CT-Segmentations')\n",
+        "ORDER BY\n",
+        "  Quantity_CodeMeaning,\n",
+        "  Units_CodeMeaning\n",
+        "```\n",
+        "\n",
+        "Anatomic structures dictionary: https://docs.google.com/spreadsheets/d/169G8Yo2tZKIYYP3JmHVFLWERQCM9XsRnz3xYEZlAUoo/edit?usp=sharing\n",
+        "\n",
+        "Extracted using\n",
+        "\n",
+        "\n",
+        "```sql\n",
+        "SELECT\n",
+        "  DISTINCT(findingSite.CodeMeaning) FindingSite_CodeMeaning,\n",
+        "  findingSite.CodeValue FindingSite_CodeValue,\n",
+        "  findingSite.CodingSchemeDesignator FindingSite_CodingSchemeDesignator,\n",
+        "  lateralityModifier.CodeMeaning FindingSiteLaterality_CodeMeaning,\n",
+        "  lateralityModifier.CodeValue FindingSiteLaterality_CodeValue,\n",
+        "  lateralityModifier.CodingSchemeDesignator FindingSiteLaterality_CodingSchemeDesignator,\n",
+        "FROM\n",
+        "  `bigquery-public-data.idc_v18.quantitative_measurements` qm\n",
+        "JOIN\n",
+        "  `bigquery-public-data.idc_v18.dicom_all` da\n",
+        "ON\n",
+        "  qm.segmentationInstanceUID=da.SOPInstanceUID\n",
+        "WHERE\n",
+        "  analysis_result_id IN ('TotalSegmentator-CT-Segmentations')\n",
+        "ORDER BY\n",
+        "  FindingSite_CodeMeaning,\n",
+        "  FindingSiteLaterality_CodeMeaning\n",
+        "```"
+      ],
+      "metadata": {
+        "id": "Jh_QXnuhEy78"
+      }
+    },
     {
       "cell_type": "markdown",
       "source": [