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session_info.txt
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62 lines (58 loc) · 5.25 KB
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R version 4.4.3 (2025-02-28)
Platform: aarch64-apple-darwin20
Running under: macOS Sequoia 15.3
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods base
other attached packages:
[1] Giotto_4.2.2 GiottoClass_0.4.10 STdeconvolve_1.3.2
[4] scran_1.34.0 scater_1.34.1 scuttle_1.16.0
[7] SingleCellExperiment_1.28.1 SummarizedExperiment_1.36.0 GenomicRanges_1.58.0
[10] GenomeInfoDb_1.42.3 IRanges_2.40.1 S4Vectors_0.44.0
[13] MatrixGenerics_1.18.1 matrixStats_1.5.0 lubridate_1.9.4
[16] forcats_1.0.1 stringr_1.5.2 purrr_1.1.0
[19] readr_2.1.5 tidyr_1.3.1 tibble_3.3.0
[22] tidyverse_2.0.0 SPOTlight_1.10.0 Biobase_2.66.0
[25] BiocGenerics_0.52.0 dplyr_1.1.4 patchwork_1.3.2
[28] ggplot2_4.0.0 Seurat_5.3.0 SeuratObject_5.2.0
[31] sp_2.2-0
loaded via a namespace (and not attached):
[1] RcppAnnoy_0.0.22 splines_4.4.3 later_1.4.4 polyclip_1.10-7
[5] fastDummies_1.7.5 lifecycle_1.0.4 edgeR_4.4.2 doParallel_1.0.17
[9] globals_0.18.0 lattice_0.22-7 MASS_7.3-65 backports_1.5.0
[13] magrittr_2.0.4 limma_3.62.2 plotly_4.11.0 metapod_1.14.0
[17] httpuv_1.6.16 NMF_0.28 sctransform_0.4.2 spam_2.11-1
[21] spatstat.sparse_3.1-0 reticulate_1.43.0 cowplot_1.2.0 pbapply_1.7-4
[25] RColorBrewer_1.1-3 abind_1.4-8 zlibbioc_1.52.0 Rtsne_0.17
[29] ggraph_2.2.2 tweenr_2.0.3 GenomeInfoDbData_1.2.13 ggrepel_0.9.6
[33] irlba_2.3.5.1 listenv_0.9.1 spatstat.utils_3.2-0 terra_1.8-70
[37] goftest_1.2-3 RSpectra_0.16-2 dqrng_0.4.1 spatstat.random_3.4-2
[41] fitdistrplus_1.2-4 parallelly_1.45.1 colorRamp2_0.1.0 codetools_0.2-20
[45] DelayedArray_0.32.0 ggforce_0.5.0 tidyselect_1.2.1 UCSC.utils_1.2.0
[49] farver_2.1.2 viridis_0.6.5 ScaledMatrix_1.14.0 spatstat.explore_3.5-3
[53] jsonlite_2.0.0 BiocNeighbors_2.0.1 tidygraph_1.3.1 progressr_0.17.0
[57] ggridges_0.5.7 survival_3.8-3 iterators_1.0.14 foreach_1.5.2
[61] tools_4.4.3 ica_1.0-3 Rcpp_1.1.0 glue_1.8.0
[65] gridExtra_2.3 SparseArray_1.6.2 mgcv_1.9-3 withr_3.0.2
[69] BiocManager_1.30.26 fastmap_1.2.0 bluster_1.16.0 digest_0.6.37
[73] rsvd_1.0.5 timechange_0.3.0 R6_2.6.1 mime_0.13
[77] colorspace_2.1-2 scattermore_1.2 gtools_3.9.5 tensor_1.5.1
[81] spatstat.data_3.1-9 generics_0.1.4 data.table_1.17.8 graphlayouts_1.2.2
[85] httr_1.4.7 htmlwidgets_1.6.4 S4Arrays_1.6.0 uwot_0.2.3
[89] pkgconfig_2.0.3 gtable_0.3.6 registry_0.5-1 GiottoVisuals_0.2.13
[93] lmtest_0.9-40 S7_0.2.0 XVector_0.46.0 htmltools_0.5.8.1
[97] dotCall64_1.2 scales_1.4.0 GiottoUtils_0.2.5 png_0.1-8
[101] spatstat.univar_3.1-4 tzdb_0.5.0 reshape2_1.4.4 checkmate_2.3.3
[105] nlme_3.1-168 cachem_1.1.0 zoo_1.8-14 KernSmooth_2.23-26
[109] vipor_0.4.7 parallel_4.4.3 miniUI_0.1.2 pillar_1.11.1
[113] grid_4.4.3 vctrs_0.6.5 RANN_2.6.2 promises_1.3.3
[117] BiocSingular_1.22.0 beachmat_2.22.0 xtable_1.8-4 cluster_2.1.8.1
[121] beeswarm_0.4.0 locfit_1.5-9.12 cli_3.6.5 compiler_4.4.3
[125] rlang_1.1.6 crayon_1.5.3 rngtools_1.5.2 future.apply_1.20.0
[129] plyr_1.8.9 ggbeeswarm_0.7.2 stringi_1.8.7 viridisLite_0.4.2
[133] deldir_2.0-4 gridBase_0.4-7 BiocParallel_1.40.2 nnls_1.6
[137] lazyeval_0.2.2 spatstat.geom_3.6-0 Matrix_1.7-4 RcppHNSW_0.6.0
[141] hms_1.1.4 sparseMatrixStats_1.18.0 future_1.67.0 statmod_1.5.1
[145] shiny_1.11.1 ROCR_1.0-11 memoise_2.0.1 igraph_2.0.3