SIIM.log

RadPrompter Version: 1.1.9
Model: llama3
Prompt TOML: /Users/bje/repos/SIIMPrompter/SIIM.toml
Prompt Version: 0.1
Prompt Hash: 8566c0c1dcf4f70be7f33f31eb5c1ffb
Concurrency Factor: 1
Start Time: 2024-05-31 16:10:34
End Time: 2024-05-31 17:48:55
Duration: 5901.0
Number of Items: 670
Average Processing Time: 8.807462686567165


-------------------- *** - Prompt Content - *** --------------------

[METADATA]

version = 0.1
description = "A sample prompt for RadPrompter"

[PROMPTS]

system_prompt = "You are a helpful assistant that has 20 years of experience in reading radiology reports and extracting data elements."

user_prompt_intro = "{{intro_prompt}}\n"

user_prompt_no_cot = """
I want you to extract the following data element from the report: 
{{hint}}

Provide a single answer:

"""

[CONSTRUCTOR]
system = "rdp(system_prompt)"
user = [
"rdp(user_prompt_intro + user_prompt_no_cot)"
]
stop_tags = [
" "
]


[SCHEMAS]
[SCHEMAS.PulmonaryEmbolism]
variable_name = "Pulmonary Embolism"
intro_prompt = """
Carefully review the provided chest CT report (in the <report> tag). Ensure that each data element is accurately captured.

Here is the report:
<report>
{{report}}
</report>

Please pay attention to the following details:
- Your attention to detail is crucial for maintaining the integrity of the medical records. 
- You should not confabulate information, and if something is not mentioned, you should assume that it is `Absent` unless otherwise stated.
- The report may contain additional information that is not relevant to the requested data elements. Please ignore that information.
- We are interested at findings at the time of scan, not the previous ones, so only consider the impression and findings sections of the report.
- Do not print anything else other than the provided output format.
"""
type = "select"
options = ["Present", "Absent"]
show_options_in_hint = true
hint = """
Indicate `Present` if the report explicitly mentions the patient has definitely, probably, or likely has the finding of interest. 
Indicate `Absent` if it is specifically mentioned to not be present, but also if considered unlikely.
"""

[SCHEMAS.Pneumonia]
variable_name = "Pneumonia"
intro_prompt = ""
type = "select"
options = ["Yes", "No"]
show_options_in_hint = true
hint = """
Indicate `Yes` if the report indicates the patient mostly likely has pneumonia. 
Indicate `No` if the report indicates the patient mostly likely does not have pneumonia or if pneumonia is not mentioned. 
"""

[SCHEMAS.LiverMets]
variable_name = "LiverMets"
type = "select"
intro_prompt = ""
options = ["Yes", "No"]
show_options_in_hint = true
hint = """
Indicate `Yes` if the report explicitly mentions the patient has at least 1 metastasis involving their liver. Do not consider other organs. 
Indicate `No` if the report explicitly mentions the patient has no metastasis involving their liver. Do not consider other organs. 
"""

[SCHEMAS.C1]
variable_name = "C1FX"
type = "select"
intro_prompt = ""
options = ["Yes", "No"]
show_options_in_hint = true
hint = """
Indicate `Yes` if the report explicitly mentions the patient has a fracture of C1. 
Indicate `No` if the report doesn't mention a fracture of C1. 
"""

[SCHEMAS.C2]
variable_name = "C2FX"
type = "select"
intro_prompt = ""
options = ["Yes", "No"]
show_options_in_hint = true
hint = """
Indicate `Yes` if the report explicitly mentions the patient has a fracture of C2. 
Indicate `No` if the report doesn't mention a fracture of C2. 
"""

[SCHEMAS.C3]
variable_name = "C3FX"
type = "select"
intro_prompt = ""
options = ["Yes", "No"]
show_options_in_hint = true
hint = """
Indicate `Yes` if the report explicitly mentions the patient has a fracture of C3. 
Indicate `No` if the report doesn't mention a fracture of C3. 
"""

[SCHEMAS.C4]
variable_name = "C4FX"
type = "select"
intro_prompt = ""
options = ["Yes", "No"]
show_options_in_hint = true
hint = """
Indicate `Yes` if the report explicitly mentions the patient has a fracture of C4. 
Indicate `No` if the report doesn't mention a fracture of C4. 
"""
[SCHEMAS.C5]
variable_name = "C5FX"
type = "select"
intro_prompt = ""
options = ["Yes", "No"]
show_options_in_hint = true
hint = """
Indicate `Yes` if the report explicitly mentions the patient has a fracture of C5. 
Indicate `No` if the report doesn't mention a fracture of C5. 
"""
[SCHEMAS.C6]
variable_name = "C6FX"
type = "select"
intro_prompt = ""
options = ["Yes", "No"]
show_options_in_hint = true
hint = """
Indicate `Yes` if the report explicitly mentions the patient has a fracture of C6. 
Indicate `No` if the report doesn't mention a fracture of C6. 
"""
[SCHEMAS.C7]
variable_name = "C7FX"
type = "select"
intro_prompt = ""
options = ["Yes", "No"]
show_options_in_hint = true
hint = """
Indicate `Yes` if the report explicitly mentions the patient has a fracture of C7. 
Indicate `No` if the report doesn't mention a fracture of C7. 
"""

[SCHEMAS.GliomaStatus]
variable_name = "GliomaStatus"
type = "select"
intro_prompt = ""
options = ["Progression", "Regression", "Stable"]
show_options_in_hint = true
hint = """
Indicate `Progression` if the report indicates that the glioma is most likely progressing / getting worse. 
Indicate `Regression` if the report indicates that the glioma is most likely improving / responding to treatment. 
Indicate `Stable` if the report indicates that the glioma is most likely not changed from the prior. 
"""