Analyzing the firing properties of a single, detailed L5b PC neuron.
DOCUMENTATION: https://l5neuronsimulation.readthedocs.io/en/latest/
Attenuation - investigated the attenuation of the cell.
F-ICurve - used to plot F-ICurve. NOT UP TO DATE
Resistance - looking at input resistance.
biophys_components - this is where mechanisms and templates are stored. This folder is used as the basis for all simulations in the project.
Clustering - this is where I worked on building the clustering mechanisms. MAYBE REMOVE
EPSP_Tuning - this folder has both old EPSP tuning for Song et al. and also the conductance scaling MAYBE REFACTOR
FullSimulation - this is the main folder, where the full simulations are run. See README in folder for more.
Group_EPSC_Tuning - where EPSC tuning is performed (on both basal and apical dendrites).
HayFiringProperties - confirming that our cell model matches the experimental firing properties that Hay et al. 2011 tuned for.
IPSC_Tuning - where IPSC tuning is performed (perisomatic, basal, and apical).
MorphAnalysis - folder for exploring the morphology of the cell.
Plot_Cell - folder for plotting the cell and synapse locations on the cell.
ShortPlasticity - used to build and check short term plasticity for both excitation and inhibition.
StepCurrent - used to ensure that a suprathreshold step current induces the proper behavior (as determined by Hay et al. 2011).