Features that are needed in NodeNorm ElasticSearch before we can switch to it

[gaurav]

Fixes in NodeNorm ES

• Fix curie -> curies in the POST request (it's still curie in the GET request unfortunately)
• GET endpoint should work (e.g. https://biothings.ci.transltr.io/nodenorm/get_normalized_nodes?curie=CHEBI:15377 should work)
• Add set_id endpoints (https://github.com/NCATSTranslator/NodeNormalization/blob/master/node_normalizer/set_id.py)
• Some NodeNorm GET requests return errors when NodeNorm ES should just indicate that they can't be normalized biothings/pending.api#314
• Conflation, individual_types and descriptions appears to be permanently on in NodeNorm ES GET biothings/pending.api#315
• Individual types not being returned in either NodeNorm ES GET or POST biothings/pending.api#316
• Return the taxa for cliques if one is present

Tests needed in Babel Validation

• Copy set_id tests to babel-validation.
• Add tests for types (both for complicated cases and especially for conflations)

See also: #332

[ctrl-schaff]

Update: GET Request corrected

#!/usr/bin/env bash
curl -X 'GET' 'https://biothings.ci.transltr.io/nodenorm/get_normalized_nodes?curie=MESH%3AD014867&curie=NCIT%3AC34373&conflate=true&drug_chemical_conflate=false&description=false&individual_types=false'
exit 0

Output Response:

{
  "MESH:D014867": {
    "id": {
      "identifier": "CHEBI:15377",
      "label": "Water",
      "description": "An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms"
    },
    "equivalent_identifiers": [
      {
        "identifier": "CHEBI:15377",
        "label": "water",
        "description": "An oxygen hydride consisting of an oxygen atom that is covalently bonded to two hydrogen atoms",
        "type": "e"
      },
      {
        "identifier": "UNII:059QF0KO0R",
        "label": "WATER",
        "type": "e"
      },
      {
        "identifier": "PUBCHEM.COMPOUND:962",
        "label": "Water",
        "type": "e"
      },
      {
        "identifier": "CHEMBL.COMPOUND:CHEMBL1098659",
        "label": "WATER",
        "type": "e"
      },
      {
        "identifier": "DRUGBANK:DB09145",
        "label": "Water",
        "type": "e"
      },
      {
        "identifier": "MESH:D014867",
        "label": "Water",
        "type": "e"
      },
      {
        "identifier": "CAS:231-791-2",
        "type": "e"
      },
      {
        "identifier": "CAS:7732-18-5",
        "type": "e"
      },
      {
        "identifier": "HMDB:HMDB0002111",
        "label": "Water",
        "type": "e"
      },
      {
        "identifier": "KEGG.COMPOUND:C00001",
        "label": "H2O",
        "type": "e"
      },
      {
        "identifier": "INCHIKEY:XLYOFNOQVPJJNP-UHFFFAOYSA-N",
        "type": "e"
      },
      {
        "identifier": "UMLS:C0043047",
        "label": "water",
        "type": "e"
      },
      {
        "identifier": "RXCUI:11295",
        "type": "e"
      },
      {
        "identifier": "CHEBI:33813",
        "label": "((18)O)water",
        "description": "A form of water consisting of two hydrogen atoms covalently bonded to an oxygen-18 atom.",
        "type": "e"
      },
      {
        "identifier": "UNII:7QV8F8BYNJ",
        "label": "WATER O-18",
        "type": "e"
      },
      {
        "identifier": "PUBCHEM.COMPOUND:105142",
        "label": "Water-18O",
        "type": "e"
      },
      {
        "identifier": "MESH:C000615259",
        "label": "Oxygen-18",
        "type": "e"
      },
      {
        "identifier": "CAS:14314-42-2",
        "type": "e"
      },
      {
        "identifier": "CAS:14797-71-8",
        "type": "e"
      },
      {
        "identifier": "INCHIKEY:XLYOFNOQVPJJNP-NJFSPNSNSA-N",
        "type": "e"
      },
      {
        "identifier": "UMLS:C4546909",
        "label": "Oxygen-18",
        "type": "e"
      },
      {
        "identifier": "UNII:63M8RYN44N",
        "label": "WATER O-15",
        "type": "e"
      },
      {
        "identifier": "PUBCHEM.COMPOUND:10129877",
        "label": "Water O-15",
        "type": "e"
      },
      {
        "identifier": "CHEMBL.COMPOUND:CHEMBL2106489",
        "label": "WATER O 15",
        "type": "e"
      },
      {
        "identifier": "MESH:C000615263",
        "label": "Oxygen-15",
        "type": "e"
      },
      {
        "identifier": "CAS:24286-21-3",
        "type": "e"
      },
      {
        "identifier": "INCHIKEY:XLYOFNOQVPJJNP-BJUDXGSMSA-N",
        "type": "e"
      },
      {
        "identifier": "UMLS:C4546912",
        "label": "Oxygen-15",
        "type": "e"
      },
      {
        "identifier": "RXCUI:150985",
        "type": "g"
      },
      {
        "identifier": "UMLS:C0590256",
        "label": "water 1000 MG/ML Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:204918",
        "type": "g"
      },
      {
        "identifier": "UMLS:C0705005",
        "label": "water 1000 MG/ML Inhalation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:340584",
        "type": "g"
      },
      {
        "identifier": "UMLS:C1141499",
        "label": "water 1000 MG/ML",
        "type": "g"
      },
      {
        "identifier": "RXCUI:379002",
        "type": "g"
      },
      {
        "identifier": "UMLS:C1253380",
        "label": "water Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1043588",
        "type": "g"
      },
      {
        "identifier": "UMLS:C2948223",
        "label": "water Ophthalmic Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1045437",
        "type": "g"
      },
      {
        "identifier": "UMLS:C2948996",
        "label": "OcuFresh",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1045439",
        "type": "g"
      },
      {
        "identifier": "UMLS:C2948997",
        "label": "water Ophthalmic Irrigation Solution [OcuFresh]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1053147",
        "type": "g"
      },
      {
        "identifier": "UMLS:C2961554",
        "label": "water 980 MG/ML",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1053148",
        "type": "g"
      },
      {
        "identifier": "UMLS:C2961555",
        "label": "water 980 MG/ML Ophthalmic Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1053153",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1053154",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1053172",
        "type": "g"
      },
      {
        "identifier": "UMLS:C2961577",
        "label": "water 986 MG/ML",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1053173",
        "type": "g"
      },
      {
        "identifier": "UMLS:C2949578",
        "label": "water 986 MG/ML Ophthalmic Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1053428",
        "type": "g"
      },
      {
        "identifier": "UMLS:C2961756",
        "label": "water 991 MG/ML",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1053429",
        "type": "g"
      },
      {
        "identifier": "UMLS:C2948224",
        "label": "water 991 MG/ML Ophthalmic Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1151100",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3205651",
        "label": "water 983 MG/ML",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1151101",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3205652",
        "label": "water 983 MG/ML Ophthalmic Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1161792",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3216125",
        "label": "water Inhalant Product",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1161794",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3216127",
        "label": "water Irrigation Product",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1161795",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3216128",
        "label": "water Ophthalmic Product",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1180556",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3234408",
        "label": "OcuFresh Ophthalmic Product",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1235498",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3254839",
        "label": "water 984 MG/ML",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1235499",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3254840",
        "label": "water 984 MG/ML Ophthalmic Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1235500",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3254841",
        "label": "Dorama-Neo",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1235501",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3254842",
        "label": "water 984 MG/ML [Dorama-Neo]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1235502",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3254843",
        "label": "water Ophthalmic Irrigation Solution [Dorama-Neo]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1235503",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3254844",
        "label": "Dorama-Neo Ophthalmic Product",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1235504",
        "type": "g"
      },
      {
        "identifier": "UMLS:C1584203",
        "label": "water 984 MG/ML Ophthalmic Irrigation Solution [Dorama-Neo]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1423320",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644056",
        "label": "water 985 MG/ML",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1423321",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644010",
        "label": "water 985 MG/ML Ophthalmic Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1424601",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644310",
        "label": "Pur-Wash",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1424602",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644311",
        "label": "water 983 MG/ML [Pur-Wash]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1424603",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644312",
        "label": "water Ophthalmic Irrigation Solution [Pur-Wash]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1424604",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644313",
        "label": "Pur-Wash Ophthalmic Product",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1424605",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3542472",
        "label": "water 983 MG/ML Ophthalmic Irrigation Solution [Pur-Wash]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1425974",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644850",
        "label": "Opticlear",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1425975",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644851",
        "label": "water 985 MG/ML [Opticlear]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1425976",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644852",
        "label": "water Ophthalmic Irrigation Solution [Opticlear]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1425977",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644853",
        "label": "Opticlear Ophthalmic Product",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1425978",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3644854",
        "label": "water 985 MG/ML Ophthalmic Irrigation Solution [Opticlear]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1489375",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3820231",
        "label": "water 988 MG/ML",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1489376",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3820105",
        "label": "water 988 MG/ML Ophthalmic Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1489377",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3819654",
        "label": "water 988 MG/ML [OcuFresh]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1489378",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3818671",
        "label": "water 988 MG/ML Ophthalmic Irrigation Solution [OcuFresh]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1539535",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3832760",
        "label": "water 1000 MG/ML Ophthalmic Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1549851",
        "type": "g"
      },
      {
        "identifier": "UMLS:C0720356",
        "label": "Eye Stream",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1549852",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3856248",
        "label": "water 986 MG/ML [Eye Stream]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1549853",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3856249",
        "label": "water Ophthalmic Irrigation Solution [Eye Stream]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1549854",
        "type": "g"
      },
      {
        "identifier": "UMLS:C3856250",
        "label": "Eye Stream Ophthalmic Product",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1549855",
        "type": "g"
      },
      {
        "identifier": "UMLS:C0976847",
        "label": "water 986 MG/ML Ophthalmic Irrigation Solution [Eye Stream]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1923419",
        "type": "g"
      },
      {
        "identifier": "RXCUI:1923420",
        "type": "g"
      },
      {
        "identifier": "RXCUI:2108561",
        "type": "g"
      },
      {
        "identifier": "UMLS:C0770156",
        "label": "water Inhalation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:2282752",
        "type": "g"
      },
      {
        "identifier": "UMLS:C5243370",
        "label": "water 700 MG/ML",
        "type": "g"
      },
      {
        "identifier": "RXCUI:2282753",
        "type": "g"
      },
      {
        "identifier": "UMLS:C5241967",
        "label": "water 700 MG/ML Ophthalmic Irrigation Solution",
        "type": "g"
      },
      {
        "identifier": "RXCUI:2360606",
        "type": "g"
      },
      {
        "identifier": "UMLS:C5244464",
        "label": "Firstflush",
        "type": "g"
      },
      {
        "identifier": "RXCUI:2360607",
        "type": "g"
      },
      {
        "identifier": "UMLS:C5244465",
        "label": "water 983 MG/ML [Firstflush]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:2360608",
        "type": "g"
      },
      {
        "identifier": "UMLS:C5244466",
        "label": "water Ophthalmic Irrigation Solution [Firstflush]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:2360609",
        "type": "g"
      },
      {
        "identifier": "UMLS:C5244467",
        "label": "Firstflush Ophthalmic Product",
        "type": "g"
      },
      {
        "identifier": "RXCUI:2360610",
        "type": "g"
      },
      {
        "identifier": "UMLS:C5244468",
        "label": "water 983 MG/ML Ophthalmic Irrigation Solution [Firstflush]",
        "type": "g"
      },
      {
        "identifier": "RXCUI:2704855",
        "type": "g"
      },
      {
        "identifier": "RXCUI:2704856",
        "type": "g"
      },
      {
        "identifier": "UMLS:C1883551",
        "label": "water, O-15",
        "type": "y"
      },
      {
        "identifier": "RXCUI:1427071",
        "type": "y"
      },
      {
        "identifier": "UMLS:C0359299",
        "label": "sterile water",
        "type": "y"
      },
      {
        "identifier": "RXCUI:107129",
        "type": "y"
      },
      {
        "identifier": "UMLS:C3857954",
        "label": "water, O-18",
        "type": "y"
      },
      {
        "identifier": "RXCUI:1551628",
        "type": "y"
      }
    ],
    "type": [
      "biolink:SmallMolecule",
      "biolink:MolecularEntity",
      "biolink:ChemicalEntity",
      "biolink:PhysicalEssence",
      "biolink:ChemicalOrDrugOrTreatment",
      "biolink:ChemicalEntityOrGeneOrGeneProduct",
      "biolink:ChemicalEntityOrProteinOrPolypeptide",
      "biolink:NamedThing",
      "biolink:PhysicalEssenceOrOccurrent",
      "biolink:Drug",
      "biolink:OntologyClass",
      "biolink:MolecularMixture",
      "biolink:ChemicalMixture"
    ],
    "information_content": 47.7
  },
  "NCIT:C34373": {
    "id": {
      "identifier": "MONDO:0004976",
      "label": "amyotrophic lateral sclerosis",
      "description": "Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease characterized by progressive muscular paralysis reflecting degeneration of motor neurons in the primary motor cortex, corticospinal tracts, brainstem and spinal cord."
    },
    "equivalent_identifiers": [
      {
        "identifier": "MONDO:0004976",
        "label": "amyotrophic lateral sclerosis",
        "description": "Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease characterized by progressive muscular paralysis reflecting degeneration of motor neurons in the primary motor cortex, corticospinal tracts, brainstem and spinal cord.",
        "type": "e"
      },
      {
        "identifier": "DOID:332",
        "label": "amyotrophic lateral sclerosis",
        "type": "e"
      },
      {
        "identifier": "orphanet:803",
        "type": "e"
      },
      {
        "identifier": "UMLS:C0002736",
        "label": "Amyotrophic Lateral Sclerosis",
        "type": "e"
      },
      {
        "identifier": "MESH:D000690",
        "label": "Amyotrophic Lateral Sclerosis",
        "type": "e"
      },
      {
        "identifier": "MEDDRA:10002026",
        "type": "e"
      },
      {
        "identifier": "MEDDRA:10052889",
        "type": "e"
      },
      {
        "identifier": "NCIT:C34373",
        "label": "Amyotrophic Lateral Sclerosis",
        "description": "A neurodegenerative disorder characterized by progressive degeneration of the motor neurons of the central nervous system. It results in weakness and atrophy of the muscles which leads to an inability to initiate and control voluntary movements.",
        "type": "e"
      },
      {
        "identifier": "SNOMEDCT:86044005",
        "type": "e"
      },
      {
        "identifier": "medgen:274",
        "type": "e"
      },
      {
        "identifier": "icd11.foundation:1982355687",
        "type": "e"
      },
      {
        "identifier": "ICD10:G12.21",
        "type": "e"
      },
      {
        "identifier": "ICD9:335.20",
        "type": "e"
      },
      {
        "identifier": "KEGG.DISEASE:05014",
        "type": "e"
      },
      {
        "identifier": "HP:0007354",
        "label": "Amyotrophic lateral sclerosis",
        "type": "e"
      }
    ],
    "type": [
      "biolink:Disease",
      "biolink:DiseaseOrPhenotypicFeature",
      "biolink:BiologicalEntity",
      "biolink:ThingWithTaxon",
      "biolink:NamedThing"
    ],
    "information_content": 74.9
  }
}

[ctrl-schaff]

Update POST request API corrected:

#!/usr/bin/env bash
curl -X 'POST' \
  'https://biothings.ci.transltr.io/nodenorm/get_normalized_nodes' \
  -H 'accept: application/json' \
  -H 'Content-Type: application/json' \
  -d '{
  "curies": [
    "MESH:D014867",
    "NCIT:C34373"
  ],
  "conflate": true,
  "description": false,
  "drug_chemical_conflate": false
}'

exit 0

Output

{
  "MESH:D014867": {
    "id": {
      "identifier": "CHEBI:15377",
      "label": "Water"
    },
    "equivalent_identifiers": [
      {
        "identifier": "CHEBI:15377",
        "label": "water"
      },
      {
        "identifier": "UNII:059QF0KO0R",
        "label": "WATER"
      },
      {
        "identifier": "PUBCHEM.COMPOUND:962",
        "label": "Water"
      },
      {
        "identifier": "CHEMBL.COMPOUND:CHEMBL1098659",
        "label": "WATER"
      },
      {
        "identifier": "DRUGBANK:DB09145",
        "label": "Water"
      },
      {
        "identifier": "MESH:D014867",
        "label": "Water"
      },
      {
        "identifier": "CAS:231-791-2"
      },
      {
        "identifier": "CAS:7732-18-5"
      },
      {
        "identifier": "HMDB:HMDB0002111",
        "label": "Water"
      },
      {
        "identifier": "KEGG.COMPOUND:C00001",
        "label": "H2O"
      },
      {
        "identifier": "INCHIKEY:XLYOFNOQVPJJNP-UHFFFAOYSA-N"
      },
      {
        "identifier": "UMLS:C0043047",
        "label": "water"
      },
      {
        "identifier": "RXCUI:11295"
      }
    ],
    "type": [
      "biolink:SmallMolecule",
      "biolink:MolecularEntity",
      "biolink:ChemicalEntity",
      "biolink:PhysicalEssence",
      "biolink:ChemicalOrDrugOrTreatment",
      "biolink:ChemicalEntityOrGeneOrGeneProduct",
      "biolink:ChemicalEntityOrProteinOrPolypeptide",
      "biolink:NamedThing",
      "biolink:PhysicalEssenceOrOccurrent"
    ],
    "information_content": 47.7
  },
  "NCIT:C34373": {
    "id": {
      "identifier": "MONDO:0004976",
      "label": "amyotrophic lateral sclerosis"
    },
    "equivalent_identifiers": [
      {
        "identifier": "MONDO:0004976",
        "label": "amyotrophic lateral sclerosis"
      },
      {
        "identifier": "DOID:332",
        "label": "amyotrophic lateral sclerosis"
      },
      {
        "identifier": "orphanet:803"
      },
      {
        "identifier": "UMLS:C0002736",
        "label": "Amyotrophic Lateral Sclerosis"
      },
      {
        "identifier": "MESH:D000690",
        "label": "Amyotrophic Lateral Sclerosis"
      },
      {
        "identifier": "MEDDRA:10002026"
      },
      {
        "identifier": "MEDDRA:10052889"
      },
      {
        "identifier": "NCIT:C34373",
        "label": "Amyotrophic Lateral Sclerosis"
      },
      {
        "identifier": "SNOMEDCT:86044005"
      },
      {
        "identifier": "medgen:274"
      },
      {
        "identifier": "icd11.foundation:1982355687"
      },
      {
        "identifier": "ICD10:G12.21"
      },
      {
        "identifier": "ICD9:335.20"
      },
      {
        "identifier": "KEGG.DISEASE:05014"
      },
      {
        "identifier": "HP:0007354",
        "label": "Amyotrophic lateral sclerosis"
      }
    ],
    "type": [
      "biolink:Disease",
      "biolink:DiseaseOrPhenotypicFeature",
      "biolink:BiologicalEntity",
      "biolink:ThingWithTaxon",
      "biolink:NamedThing"
    ],
    "information_content": 74.9
  }
}

[ctrl-schaff]

Update: set-identification endpoint added. Along with swagger ui mirroring that of the original nodenorm. Please see
https://biothings.ci.transltr.io/nodenorm/api/doc