add linux support

Author: tpoint75

demos/Demo_CorrelationFCS.py

@@ -9,9 +9,9 @@
 
     sn = snAPI()
     sn.getDeviceIDs()
-    sn.getFileDevice(r"D:\Data\PicoQuant\OpenCLTest\Atto655+Cy5_diff_FCS+FLCS_Conv.ptu")
-    #sn.getDevice()
-    sn.initDevice(MeasMode.T2)
+    #sn.getFileDevice(r"\mnt\d\Data\PicoQuant\OpenCLTest\Atto655+Cy5_diff_FCS+FLCS_Conv.ptu")
+    sn.getDevice()
+    sn.initDevice(MeasMode.T3)
 
     # set the configuration for your device type
     sn.loadIniConfig(r"config\MH.ini")
@@ -21,7 +21,7 @@
 
     # 2. set windowSize and startTime
     sn.correlation.setFFCSParameters(1, 2, 1e6, 1e12, 100)
-    sn.correlation.measure(2000,savePTU=False)
+    sn.correlation.measure(2000,savePTU=False, waitFinished=True)
 
     while True:
         finished = sn.correlation.isFinished()

demos/Demo_CorrelationG2.py

@@ -10,14 +10,16 @@
     sn = snAPI()
     sn.getDeviceIDs()
     sn.getDevice()
-    sn.getFileDevice(r"D:\Data\PicoQuant\CW_Shelved.ptu") # T2 File
-    #sn.initDevice(MeasMode.T2)
+    #sn.getFileDevice(r"D:\Data\PicoQuant\CW_Shelved.ptu") # T2 File
+    #sn.getFileDevice(r"\mnt\d\Data\PicoQuant\CW_Shelved.ptu") # T2 File
+
+    sn.initDevice(MeasMode.T2)
 
     # set the configuration for your device type
     sn.loadIniConfig("config\MH.ini")
 
     # 1. shift the signals to max correlation max at tau = 0
-    #sn.device.setInputChannelOffset(1, 1588)
+    sn.device.setInputChannelOffset(1, 1588)
 
     # only process data from 70s to end of file 
     sn.manipulators.subStream(70)

demos/Demo_HistogramRefresh.py

@@ -22,16 +22,16 @@
 
     # change histogram parameter in T2 mode
     sn.histogram.setRefChannel(0)
-    sn.histogram.setBinWidth(250)
+    sn.histogram.setBinWidth(100)
     sn.histogram.setNumBins(10000)
-    sn.histogram.measure(acqTime=10000, waitFinished=True, savePTU=False)
+    sn.histogram.measure(acqTime=10000, waitFinished=False, savePTU=True)
 
     while True:
         finished = sn.histogram.isFinished()
         data, bins = sn.histogram.getData()
 
         # 1s refresh time
-        plt.pause(1)
+        plt.pause(.1)
         plt.clf()
         plt.plot(bins, data[0], linewidth=2.0, label='sync')
         for c in range(1, 1+sn.deviceConfig["NumChans"]):

demos/Demo_HistogramSimple.py

@@ -19,10 +19,10 @@
     sn.loadIniConfig("config\MH.ini")
 
     sn.histogram.setRefChannel(0)
-    sn.histogram.setBinWidth(5)
-    sn.histogram.setNumBins(100000)
+    sn.histogram.setBinWidth(100)
+    sn.histogram.setNumBins(1000)
     # start histogram measurement
-    sn.histogram.measure(acqTime=1000,savePTU=True)
+    sn.histogram.measure(acqTime=1000, waitFinished=True, savePTU=True)
 
     # get the data
     data, bins = sn.histogram.getData()
@@ -34,7 +34,8 @@
         for c in range(1, 1+sn.deviceConfig["NumChans"]):
             plt.plot(bins, data[c], linewidth=2.0, label=f'chan{c}')
         plt.xlabel('Time [ps]')
-        plt.ylabel('Counts')
+        plt.ylabel('Counts', )
+        plt.yscale('log', base=10, nonpositive='clip')
         plt.legend()
         plt.title("Counts / Time")
         plt.pause(0.01)

demos/Demo_TimeTrace.py

@@ -7,15 +7,18 @@
 if(__name__ == "__main__"):
 
     sn = snAPI()
+    sn.setLogLevel(LogLevel.Config, True)
     sn.getDevice()
+    sn.initDevice(MeasMode.T3)
 
     # alternatively read data from file
     sn.setLogLevel(LogLevel.DataFile, True)
-    sn.initDevice(MeasMode.T2)
+    #sn.getFileDevice(r"\mnt\d\Data\PicoQuant\CW_Shelved.ptu") # T2 File
+    #sn.getFileDevice(r"D:\Data\PicoQuant\CW_Shelved.ptu") # T2 File
 
     # enable this to get info about loading config
     sn.setLogLevel(logLevel=LogLevel.Config, onOff=True)
-    sn.loadIniConfig("config\MH.ini")
+    #sn.loadIniConfig(r"config\MH.ini")
 
     numChans = sn.deviceConfig["NumChans"]
     triggerMode = TrigMode.Edge if sn.deviceConfig["SyncTrigMode"] == "Edge" else TrigMode.CFD
@@ -36,25 +39,26 @@
             sn.device.setInputEdgeTrig(-1, -50, 0)
 
     # configure timetrace
-    sn.timeTrace.setNumBins(10000)
-    sn.timeTrace.setHistorySize(10)
+    sn.timeTrace.setNumBins(1000)
+    sn.timeTrace.setHistorySize(1)
 
     # you can set a custom file name or path
-    sn.setPTUFilePath("C:\Data\PicoQuant\MyFileName.ptu")
+    sn.setPTUFilePath("MyFileName.ptu")
 
     # measure 10s
-    sn.timeTrace.measure(10000, waitFinished=False, savePTU=True)
+    sn.timeTrace.measure(1000, waitFinished=False, savePTU=True)
 
     while True: 
         finished = sn.timeTrace.isFinished()
-        counts, times = sn.timeTrace.getData() 
+        counts, times = sn.timeTrace.getData(normalized=True) 
         plt.clf()
         plt.plot(times, counts[0], linewidth=2.0, label='sync')
         for c in range(1, 1+sn.deviceConfig["NumChans"]):
             plt.plot(times, counts[c], linewidth=2.0, label=f'chan{c}')
 
         plt.xlabel('Time [s]')
         plt.ylabel('Counts[Cts/s]')
+        plt.yscale('log', base=10, nonpositive='clip')
         plt.legend()
         plt.title("TimeTrace")
         plt.pause(0.1)

dist/snapi-1.1.0-cp313-cp313-win_amd64.whl

@@ -67,6 +67,18 @@ Dependencies
 
 3. Once the installation is complete, verify that the package is installed by running the command `import snAPI` in a Python interpreter. If no error message is shown, the installation was successful.
 
+On Linux
+--------
+
+1. Go to the linux sub directory
+
+2. Execute commands
+
+::
+
+    chmod +x install.sh
+    sudo ./install.sh
+
 Additional Features
 -------------------
 

dist/snapi-1.1.0.tar.gz

@@ -67,6 +67,18 @@ Dependencies
 
 3. Once the installation is complete, verify that the package is installed by running the command `import snAPI` in a Python interpreter. If no error message is shown, the installation was successful.
 
+On Linux
+--------
+
+1. Go to the linux sub directory
+
+2. Execute commands
+
+::
+
+    chmod +x install.sh
+    sudo ./install.sh
+
 Additional Features
 -------------------
 

doc_source/install.rst

@@ -716,9 +716,13 @@ <h2 id="I">I</h2>
       <li><a href="snAPI.Utils.html#snAPI.Utils.Color.IPur">IPur (snAPI.Utils.Color attribute)</a>
 </li>
       <li><a href="snAPI.Utils.html#snAPI.Utils.Color.IRed">IRed (snAPI.Utils.Color attribute)</a>
+</li>
+      <li><a href="snAPI.Main.html#snAPI.Main.snAPI.is_linux">is_linux (snAPI.Main.snAPI attribute)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="snAPI.Main.html#snAPI.Main.snAPI.is_win">is_win (snAPI.Main.snAPI attribute)</a>
+</li>
       <li><a href="snAPI.Main.html#snAPI.Main.Correlation.isFinished">isFinished() (snAPI.Main.Correlation method)</a>
 
       <ul>