diff --git a/workflows/bbbc.py b/workflows/bbbc.py index 44138f1..73e0a39 100644 --- a/workflows/bbbc.py +++ b/workflows/bbbc.py @@ -1,6 +1,6 @@ from pathlib import Path -from sophios.api.pythonapi import Step, Workflow +from sophios.apis.python.api import Step, Workflow def workflow() -> Workflow: bbbcdownload = Step(clt_path='../image-workflows/cwl_adapters/bbbcdownload.cwl') diff --git a/workflows/bbbc_sub.py b/workflows/bbbc_sub.py index 083c10a..3610927 100644 --- a/workflows/bbbc_sub.py +++ b/workflows/bbbc_sub.py @@ -1,8 +1,8 @@ from pathlib import Path from sophios import plugins -from sophios.api import pythonapi -from sophios.api.pythonapi import Step, Workflow +from sophios.apis.python import api +from sophios.apis.python.api import Step, Workflow def workflow() -> Workflow: bbbcdownload = Step(clt_path='cwl_adapters/bbbcdownload.cwl') @@ -70,7 +70,7 @@ def workflow2() -> Workflow: # viz.compile() # Do NOT .run() here if __name__ == '__main__': - pythonapi.global_config = plugins.get_tools_cwl(str(Path().home())) # Use path fallback + api.global_config = plugins.get_tools_cwl(str(Path().home())) # Use path fallback viz = workflow2() viz.run() # .run() here, inside main