🧬 PyAutoScientist → https://github.com/PyAutoLabs/PyAutoScientist — this repo is one organ of the PyAuto organism.
📖 Full documentation → https://pyautoscientist.readthedocs.io — the whole PyAutoScientist organism, including how to fork and run your own.
The reasoning layer of the PyAuto organism. Brain figures out how work gets done: it classifies incoming tasks, plans them, and routes them to specialist agents, delegating execution to the other organs. It holds no state, runs no health checks, and never releases anything itself.
The organism is described once in ORGANISM.md. The short version:
| Organ | Repo | Job |
|---|---|---|
| Mind | PyAutoMind | what to do — intent, priorities, workflow state |
| Brain | PyAutoBrain (this repo) | how to do it — reasoning, planning, routing |
| Heart | PyAutoHeart | is it healthy — the release-readiness verdict |
| Hands | PyAutoBuild | do it — packaging, tagging, PyPI releases |
| Memory | PyAutoMemory | what we know — long-term scientific knowledge |
| Gut | PyAutoGut | what we shed — condemned branches, stashes and dead code, held recoverably then voided |
Agents live under agents/ in two tiers: conductors (front doors a
human drives; they decide and act) and faculties (read-only judgments
the conductors consult). Humans mostly reach them through short slash
commands — /intake, /feature, /bug, /health, /route — whose
bodies live in skills/.
bin/pyauto-brain help # list the agents
bin/pyauto-brain vitals # one health tick + the dashboard card
bash bin/install.sh # symlink every organ's skills into ~/.claudeRuns straight from its checkout — no pip install. Agent contracts and the
organ boundary are in AGENTS.md; how much a run may do without
a human is the autonomy contract, AUTONOMY.md. The full
organism documentation — including how to fork and run your own — is at
https://pyautoscientist.readthedocs.io (source: docs/).