From e70886ad422f59028af85c5c11212540b5bb8971 Mon Sep 17 00:00:00 2001
From: Jammy2211 <JNightingale2211@gmail.com>
Date: Thu, 7 May 2026 10:35:46 +0100
Subject: [PATCH] refactor: replace os.path with pathlib

Drop legacy `from os import path` and `os.path.X` usages in workspace
scripts in favour of `pathlib.Path`. Follow-up to library refactor in
PyAutoLabs/PyAutoFit#1257.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
---
 dataset/imaging/extra_galaxies/data.fits      | Bin 5760 -> 5760 bytes
 dataset/imaging/extra_galaxies/galaxies.json  |  26 ++++++-------
 dataset/imaging/extra_galaxies/noise_map.fits | Bin 5760 -> 5760 bytes
 dataset/imaging/sersic_x2/data.fits           | Bin 5760 -> 5760 bytes
 dataset/imaging/sersic_x2/galaxies.json       |   8 ++--
 .../sersic_x2/galaxy_subtracted_data.fits     | Bin 5760 -> 5760 bytes
 dataset/imaging/sersic_x2/noise_map.fits      | Bin 5760 -> 5760 bytes
 dataset/imaging/simulated_galaxy/data.fits    | Bin 5760 -> 5760 bytes
 .../imaging/simulated_galaxy/noise_map.fits   | Bin 5760 -> 5760 bytes
 dataset/interferometer/simple/data.fits       | Bin 8640 -> 8640 bytes
 dataset/interferometer/simple/galaxies.json   |  32 ++++++++--------
 .../interferometer/simulated_galaxy/data.fits | Bin 8640 -> 8640 bytes
 dataset/multi/imaging/simple/g_data.fits      | Bin 5760 -> 5760 bytes
 dataset/multi/imaging/simple/g_galaxies.json  |  36 +++++++++---------
 dataset/multi/imaging/simple/g_noise_map.fits | Bin 5760 -> 5760 bytes
 dataset/multi/imaging/simple/r_data.fits      | Bin 5760 -> 5760 bytes
 dataset/multi/imaging/simple/r_galaxies.json  |  36 +++++++++---------
 dataset/multi/imaging/simple/r_noise_map.fits | Bin 5760 -> 5760 bytes
 output/.gitignore                             |   2 -
 scripts/ellipse/database.py                   |   3 +-
 scripts/guides/hpc/example_cpu_and_gpu.py     |   7 ++--
 scripts/guides/modeling/bug_fix.py            |   9 ++---
 .../examples/optional/info.py                 |   2 +-
 scripts/interferometer/casa_reduction.py      |   6 +--
 start_here.py                                 |   2 +-
 25 files changed, 82 insertions(+), 87 deletions(-)
 delete mode 100644 output/.gitignore

diff --git a/dataset/imaging/extra_galaxies/data.fits b/dataset/imaging/extra_galaxies/data.fits
index 5eba2b1d00b3bbf511ecbcb4d0d56546f398fff6..f97fb7c916e78c88d52aa05c7d0ac4611324813e 100644
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diff --git a/dataset/imaging/extra_galaxies/galaxies.json b/dataset/imaging/extra_galaxies/galaxies.json
index f16a7246..7ac00cc3 100644
--- a/dataset/imaging/extra_galaxies/galaxies.json
+++ b/dataset/imaging/extra_galaxies/galaxies.json
@@ -11,22 +11,22 @@
                     "type": "instance",
                     "class_path": "autogalaxy.profiles.light.standard.sersic.Sersic",
                     "arguments": {
-                        "sersic_index": 3.0,
-                        "centre": {
+                        "intensity": 1.0,
+                        "ell_comps": {
                             "type": "tuple",
                             "values": [
-                                0.0,
-                                0.0
+                                0.05263157894736841,
+                                3.2227547345982974e-18
                             ]
                         },
-                        "ell_comps": {
+                        "sersic_index": 3.0,
+                        "centre": {
                             "type": "tuple",
                             "values": [
-                                0.05263157894736841,
-                                3.2227547345982974e-18
+                                0.0,
+                                0.0
                             ]
                         },
-                        "intensity": 1.0,
                         "effective_radius": 0.6
                     }
                 },
@@ -34,7 +34,6 @@
                     "type": "instance",
                     "class_path": "autogalaxy.profiles.light.standard.exponential.Exponential",
                     "arguments": {
-                        "effective_radius": 1.6,
                         "centre": {
                             "type": "tuple",
                             "values": [
@@ -42,14 +41,15 @@
                                 0.0
                             ]
                         },
-                        "intensity": 0.5,
                         "ell_comps": {
                             "type": "tuple",
                             "values": [
                                 0.152828012432548,
                                 0.08823529411764709
                             ]
-                        }
+                        },
+                        "intensity": 0.5,
+                        "effective_radius": 1.6
                     }
                 }
             }
@@ -64,7 +64,6 @@
                     "type": "instance",
                     "class_path": "autogalaxy.profiles.light.standard.exponential.ExponentialSph",
                     "arguments": {
-                        "effective_radius": 0.5,
                         "centre": {
                             "type": "tuple",
                             "values": [
@@ -72,6 +71,7 @@
                                 3.5
                             ]
                         },
+                        "effective_radius": 0.5,
                         "intensity": 2.0
                     }
                 }
@@ -87,7 +87,6 @@
                     "type": "instance",
                     "class_path": "autogalaxy.profiles.light.standard.exponential.ExponentialSph",
                     "arguments": {
-                        "effective_radius": 0.8,
                         "centre": {
                             "type": "tuple",
                             "values": [
@@ -95,6 +94,7 @@
                                 -3.5
                             ]
                         },
+                        "effective_radius": 0.8,
                         "intensity": 2.0
                     }
                 }
diff --git a/dataset/imaging/extra_galaxies/noise_map.fits b/dataset/imaging/extra_galaxies/noise_map.fits
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diff --git a/dataset/imaging/sersic_x2/data.fits b/dataset/imaging/sersic_x2/data.fits
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diff --git a/dataset/imaging/sersic_x2/galaxies.json b/dataset/imaging/sersic_x2/galaxies.json
index 35a653c2..06a4926f 100644
--- a/dataset/imaging/sersic_x2/galaxies.json
+++ b/dataset/imaging/sersic_x2/galaxies.json
@@ -11,7 +11,7 @@
                     "type": "instance",
                     "class_path": "autogalaxy.profiles.light.standard.sersic.Sersic",
                     "arguments": {
-                        "effective_radius": 0.8,
+                        "sersic_index": 2.5,
                         "centre": {
                             "type": "tuple",
                             "values": [
@@ -20,7 +20,7 @@
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                         },
                         "intensity": 0.1,
-                        "sersic_index": 2.5,
+                        "effective_radius": 0.8,
                         "ell_comps": {
                             "type": "tuple",
                             "values": [
@@ -42,7 +42,7 @@
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                     "arguments": {
-                        "effective_radius": 0.6,
+                        "sersic_index": 3.0,
                         "centre": {
                             "type": "tuple",
                             "values": [
@@ -51,7 +51,7 @@
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                         },
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-                        "sersic_index": 3.0,
+                        "effective_radius": 0.6,
                         "ell_comps": {
                             "type": "tuple",
                             "values": [
diff --git a/dataset/imaging/sersic_x2/galaxy_subtracted_data.fits b/dataset/imaging/sersic_x2/galaxy_subtracted_data.fits
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diff --git a/dataset/imaging/simulated_galaxy/noise_map.fits b/dataset/imaging/simulated_galaxy/noise_map.fits
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diff --git a/dataset/interferometer/simple/data.fits b/dataset/interferometer/simple/data.fits
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diff --git a/dataset/interferometer/simple/galaxies.json b/dataset/interferometer/simple/galaxies.json
index 283def68..a7b4f7f3 100644
--- a/dataset/interferometer/simple/galaxies.json
+++ b/dataset/interferometer/simple/galaxies.json
@@ -11,8 +11,13 @@
                     "type": "instance",
                     "class_path": "autogalaxy.profiles.light.standard.sersic.Sersic",
                     "arguments": {
-                        "effective_radius": 0.6,
-                        "intensity": 1.0,
+                        "centre": {
+                            "type": "tuple",
+                            "values": [
+                                0.0,
+                                0.0
+                            ]
+                        },
                         "ell_comps": {
                             "type": "tuple",
                             "values": [
@@ -21,33 +26,28 @@
                             ]
                         },
                         "sersic_index": 3.0,
-                        "centre": {
-                            "type": "tuple",
-                            "values": [
-                                0.0,
-                                0.0
-                            ]
-                        }
+                        "intensity": 1.0,
+                        "effective_radius": 0.6
                     }
                 },
                 "disk": {
                     "type": "instance",
                     "class_path": "autogalaxy.profiles.light.standard.exponential.Exponential",
                     "arguments": {
-                        "intensity": 0.5,
-                        "ell_comps": {
+                        "centre": {
                             "type": "tuple",
                             "values": [
-                                0.152828012432548,
-                                0.08823529411764709
+                                0.0,
+                                0.0
                             ]
                         },
                         "effective_radius": 1.6,
-                        "centre": {
+                        "intensity": 0.5,
+                        "ell_comps": {
                             "type": "tuple",
                             "values": [
-                                0.0,
-                                0.0
+                                0.152828012432548,
+                                0.08823529411764709
                             ]
                         }
                     }
diff --git a/dataset/interferometer/simulated_galaxy/data.fits b/dataset/interferometer/simulated_galaxy/data.fits
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diff --git a/dataset/multi/imaging/simple/g_data.fits b/dataset/multi/imaging/simple/g_data.fits
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diff --git a/dataset/multi/imaging/simple/g_galaxies.json b/dataset/multi/imaging/simple/g_galaxies.json
index 4a86bbb1..3713cdda 100644
--- a/dataset/multi/imaging/simple/g_galaxies.json
+++ b/dataset/multi/imaging/simple/g_galaxies.json
@@ -5,51 +5,51 @@
             "type": "instance",
             "class_path": "autogalaxy.galaxy.galaxy.Galaxy",
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+                                3.2227547345982974e-18
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-                        "ell_comps": {
+                        "centre": {
                             "type": "tuple",
                             "values": [
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-                                0.08823529411764709
+                                0.0,
+                                0.0
                             ]
                         },
                         "intensity": 0.2,
-                        "centre": {
+                        "ell_comps": {
                             "type": "tuple",
                             "values": [
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+                                0.08823529411764709
                             ]
-                        }
+                        },
+                        "effective_radius": 1.6
                     }
                 }
             }
diff --git a/dataset/multi/imaging/simple/g_noise_map.fits b/dataset/multi/imaging/simple/g_noise_map.fits
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diff --git a/dataset/multi/imaging/simple/r_galaxies.json b/dataset/multi/imaging/simple/r_galaxies.json
index 4917932e..248e9675 100644
--- a/dataset/multi/imaging/simple/r_galaxies.json
+++ b/dataset/multi/imaging/simple/r_galaxies.json
@@ -5,51 +5,51 @@
             "type": "instance",
             "class_path": "autogalaxy.galaxy.galaxy.Galaxy",
             "arguments": {
-                "redshift": 0.5,
                 "label": null,
+                "redshift": 0.5,
                 "bulge": {
                     "type": "instance",
                     "class_path": "autogalaxy.profiles.light.standard.sersic.Sersic",
                     "arguments": {
                         "sersic_index": 3.0,
-                        "ell_comps": {
-                            "type": "tuple",
-                            "values": [
-                                0.05263157894736841,
-                                3.2227547345982974e-18
-                            ]
-                        },
                         "intensity": 0.4,
-                        "effective_radius": 0.6,
                         "centre": {
                             "type": "tuple",
                             "values": [
                                 0.0,
                                 0.0
                             ]
-                        }
+                        },
+                        "ell_comps": {
+                            "type": "tuple",
+                            "values": [
+                                0.05263157894736841,
+                                3.2227547345982974e-18
+                            ]
+                        },
+                        "effective_radius": 0.6
                     }
                 },
                 "disk": {
                     "type": "instance",
                     "class_path": "autogalaxy.profiles.light.standard.exponential.Exponential",
                     "arguments": {
-                        "effective_radius": 1.6,
-                        "ell_comps": {
+                        "centre": {
                             "type": "tuple",
                             "values": [
-                                0.152828012432548,
-                                0.08823529411764709
+                                0.0,
+                                0.0
                             ]
                         },
                         "intensity": 0.5,
-                        "centre": {
+                        "ell_comps": {
                             "type": "tuple",
                             "values": [
-                                0.0,
-                                0.0
+                                0.152828012432548,
+                                0.08823529411764709
                             ]
-                        }
+                        },
+                        "effective_radius": 1.6
                     }
                 }
             }
diff --git a/dataset/multi/imaging/simple/r_noise_map.fits b/dataset/multi/imaging/simple/r_noise_map.fits
index 98387c3bdad311f3963ef7183b4ecc7ddf906f42..9c770a7659b7c2b51174c3b369028d47a105267e 100644
GIT binary patch
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diff --git a/output/.gitignore b/output/.gitignore
deleted file mode 100644
index d6b7ef32..00000000
--- a/output/.gitignore
+++ /dev/null
@@ -1,2 +0,0 @@
-*
-!.gitignore
diff --git a/scripts/ellipse/database.py b/scripts/ellipse/database.py
index 432b0c47..86328a07 100644
--- a/scripts/ellipse/database.py
+++ b/scripts/ellipse/database.py
@@ -28,10 +28,9 @@
 **Multipoles:** Loading and inspecting multipole model-fit results from the database.
 """
 
-# from autoconf import setup_notebook; setup_notebook()
+# from autoconf import setup_notebook; setup_notebook()
 
 import os
-from os import path
 from pathlib import Path
 
 import autofit as af
diff --git a/scripts/guides/hpc/example_cpu_and_gpu.py b/scripts/guides/hpc/example_cpu_and_gpu.py
index e5695618..6a6e9ada 100644
--- a/scripts/guides/hpc/example_cpu_and_gpu.py
+++ b/scripts/guides/hpc/example_cpu_and_gpu.py
@@ -59,7 +59,6 @@
 
 You will need to update `hpc_username` to your hpc username below.
 """
-from os import path
 from pathlib import Path
 
 hpc_output_path = Path(path.sep) / "hpc" / "data" / "hpc_username" / "output"
@@ -205,7 +204,7 @@
 """
 dataset_path = Path(hpc_dataset_path, dataset_type, dataset_name)
 
-if not dataset_path.exists():
+if not dataset_Path().exists():
     local_dataset_path = Path.cwd()
     dataset_type = "imaging"
     dataset_path = Path(local_dataset_path, "dataset", dataset_type, dataset_name)
@@ -240,7 +239,7 @@
 
 dataset_path = Path(hpc_dataset_path, dataset_folder, dataset_name)
 
-if not dataset_path.exists():
+if not dataset_Path().exists():
     local_dataset_path = Path.cwd()
     dataset_folder = "imaging"
     dataset_path = Path(local_dataset_path, "dataset", dataset_folder, dataset_name)
@@ -252,7 +251,7 @@
 If the dataset does not already exist on your system, it will be created by running the corresponding
 simulator script. This ensures that all example scripts can be run without manually simulating data first.
 """
-if not dataset_path.exists():
+if not dataset_Path().exists():
     import subprocess
     import sys
 
diff --git a/scripts/guides/modeling/bug_fix.py b/scripts/guides/modeling/bug_fix.py
index d6649074..1f41e454 100644
--- a/scripts/guides/modeling/bug_fix.py
+++ b/scripts/guides/modeling/bug_fix.py
@@ -47,7 +47,6 @@ def fit():
 
     # from autoconf import setup_notebook; setup_notebook()
 
-    from os import path
     from pathlib import Path
     import autofit as af
     import autogalaxy as ag
@@ -57,7 +56,7 @@ def fit():
     __Dataset__
     """
     dataset_name = "simple"
-    dataset_path = path.join("dataset", "imaging", dataset_name)
+    dataset_path = Path("dataset") / "imaging" / dataset_name
 
     """
     __Dataset Auto-Simulation__
@@ -75,9 +74,9 @@ def fit():
         )
 
     dataset = ag.Imaging.from_fits(
-        data_path=path.join(dataset_path, "data.fits"),
-        psf_path=path.join(dataset_path, "psf.fits"),
-        noise_map_path=path.join(dataset_path, "noise_map.fits"),
+        data_path=Path(dataset_path) / "data.fits",
+        psf_path=Path(dataset_path) / "psf.fits",
+        noise_map_path=Path(dataset_path) / "noise_map.fits",
         pixel_scales=0.1,
     )
 
diff --git a/scripts/imaging/data_preparation/examples/optional/info.py b/scripts/imaging/data_preparation/examples/optional/info.py
index 01636f4a..b585b37b 100644
--- a/scripts/imaging/data_preparation/examples/optional/info.py
+++ b/scripts/imaging/data_preparation/examples/optional/info.py
@@ -62,7 +62,7 @@
 with open(info_file, "w+") as f:
     json.dump(info, f, indent=4)
 
-if os.path.exists(Path(dataset_path, "info.json")):
+if Path(dataset_path, "info.json").exists():
     os.remove(Path(dataset_path, "info.json"))
 
 
diff --git a/scripts/interferometer/casa_reduction.py b/scripts/interferometer/casa_reduction.py
index 68c57bda..ef7ab654 100644
--- a/scripts/interferometer/casa_reduction.py
+++ b/scripts/interferometer/casa_reduction.py
@@ -64,7 +64,7 @@
 #
 # def getcol_wrapper(ms, table, colname):
 #
-#     if os.path.isdir(ms):
+#     if Path(ms).is_dir():
 #         tb.open(
 #             "{}/{}".format(ms, table)
 #         )
@@ -83,7 +83,7 @@
 #
 # def get_visibilities(ms):
 #
-#     if os.path.isdir(ms):
+#     if Path(ms).is_dir():
 #         data = getcol_wrapper(
 #             ms=ms,
 #             table="",
@@ -118,7 +118,7 @@
 #
 #         return array_converted
 #
-#     if os.path.isdir(ms):
+#     if Path(ms).is_dir():
 #         uvw = getcol_wrapper(
 #             ms=ms,
 #             table="",
diff --git a/start_here.py b/start_here.py
index b298fd51..e00c07d9 100644
--- a/start_here.py
+++ b/start_here.py
@@ -60,7 +60,7 @@
 import autogalaxy.plot as aplt
 
 import matplotlib.pyplot as plt
-from os import path
+from pathlib import Path
 
 """
 Lets illustrate a simple galaxy structure calculations creating an an image of a galaxy using a light profile.