sample name

[arichelle]

https://github.com/bkellman/CellFie/blob/f247a617b361162b6680a2b94a911f68438079cc/run.m#L95

we should provide the opportunity to the user to give sample names
For figure 2 with the HPA data it will be something like
sampleNames={'Tissue1';'Tissue2';'Tissue3';'Tissue4';...
'Tissue5';'Tissue6';'Tissue7';'Tissue8';...
'Tissue9';'Tissue10';'Tissue11';'Tissue12';
'Tissue13';'Tissue14';'Tissue15';'Tissue16';
'Tissue17';'Tissue18';'Tissue19';'Tissue20';
'Tissue21';'Tissue22';'Tissue23';'Tissue24';
'Tissue25';'Tissue26';'Tissue27';'Tissue28';
'Tissue29';'Tissue30';'Tissue31';'Tissue32'};
ax.XTickLabel=sampleNames(order3);
ax.XTickLabelRotation=45;

[bkellman]

I think the fix here is to just read the first line of the file as sample names. But I was having trouble doing that robustly. Any suggestions on how to do that robustly?

[arichelle]

Multiple way to do it. Maybe the easiest is to ask the user to name the column in the text file they submit

[bkellman]

Lets modify run.m @ line 11 s.t. readtable retains colnames and we pipe that to the figures