Bump the all-julia-packages group across 1 directory with 18 updates

[dependabot]

Updates the requirements on ForwardDiff, GPUArraysCore, StaticArrays, TOML, Adapt, CUDA, OpenCL, JLArrays, Statistics, BenchmarkTools, StochasticDiffEq, OrdinaryDiffEq, SafeTestsets, Optimization, DiffEqDevTools, Zygote, OptimizationOptimisers and pocl_jll to permit the latest version.
Updates ForwardDiff to 1.3.0

Release notes

Sourced from ForwardDiff's releases.

v1.3.0

ForwardDiff v1.3.0

Diff since v1.2.2

Merged pull requests:

• Add derivative rule for LinearAlgebra.givensAlgorithm (#783) (@​devmotion)

Closed issues:

• Method ambiguities reported by Aqua (#681)

Commits

• a7991dd Add derivative rule for LinearAlgebra.givensAlgorithm (#783)
• c2ec27f Bump version from 1.2.1 to 1.2.2 (#782)
• e7c619d Fix NaN-safe mode (#777)
• 2247c4a CI tests with NaN-safe mode (#776)
• 5d2edc1 Avoid non-lazy string interpolation and replace @assert with `ArgumentError...
• 463e830 Fix gradient and Jacobian for functions with Dual output (#770)
• 5ba1f44 v1.2.0 (#772)
• c15deda Fix tests by using tag types instead of instances (#768)
• d0d6a0a improve performance of hessians with static arrays (#751)
• 42e0aa6 prevent adding methods to the functions > and >= (#771)
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Updates GPUArraysCore to 0.2.0

Commits

• 5598067 Merge pull request #64 from JuliaGPU/sd/abstractgpu
• 0f974c7 include random
• fc5f754 fix copy on convert
• 46a48c4 error for arrays
• a0319f4 cosmetic changes
• a101a4c make things CuArrays compatible
• 6062180 Merge branch 'sd/abstractgpu' of github.com:JuliaGPU/GPUArrays.jl into sd/abs...
• 240067a fix vcat/hcat
• 71e2d8a formatting
• 4ae095a don't test SVector for now
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Updates StaticArrays to 1.9.15

Release notes

Sourced from StaticArrays's releases.

v1.9.15

StaticArrays v1.9.15

Diff since v1.9.14

Merged pull requests:

• inv(::Cholesky) always symmetric (#1258) (@​astrozot)
• Bump version from 1.9.14 to 1.9.15 (#1317) (@​timholy)

Closed issues:

• Non-symmetric inverse of Cholesky decomposition (#1257)

Commits

• d579b96 Bump version from 1.9.14 to 1.9.15 (#1317)
• acefbd3 Force inv(::Cholesky) to be symmetric (#1258)
• e7c5e01 Bump version to 1.9.14 (#1311)
• 41353d2 fix: fix n-dimensional view into n-dimensional SArray with Any eltype (...
• 563adeb Specialize map!(f, array) (#1307)
• 15a2672 stop pirating size(::Type{Union{}}) (#1306)
• e23a2f5 docs: high-level motivation of static arrays (#1297)
• 19ecce7 Fix exp of SMatrix with large entries #1295 (#1296)
• 1af9ba6 Convert matrices to float in eigen (#1294)
• df49024 Fully qualify method extensions for Tuple constructor (#1293)
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Updates TOML to 1.0.3

Commits

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Updates Adapt to 4.4.0

Release notes

Sourced from Adapt's releases.

v4.4.0

Adapt v4.4.0

Diff since v4.3.0

Merged pull requests:

• Add some missed types to WrappedArray (#95) (@​kshyatt)

Commits

• df3f72e Add some missed types to WrappedArray (#95)
• cf6f6d4 Update Project.toml
• 944774b Bump version.
• 00b0ca3 Define adapt_structure for CartesianIndices (#93)
• c80a6ac Add adapt definitions for SparseArrays (#91)
• a18368b Formatter: fix merge-base with forks.
• ef12a32 Formatter: use comments instead of code suggestions.
• 29c5ee7 Switch formatting job to a different suggest action.
• 447e7b8 Add formatting action.
• bcc7559 Bump codecov/codecov-action from 4 to 5 (#89)
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Updates CUDA to 5.9.5

Release notes

Sourced from CUDA's releases.

v5.9.5

CUDA v5.9.5

Diff since v5.9.4

Merged pull requests:

• Add some matrix functions for symm/herm (#2962) (@​kshyatt)
• Ensure diagm preserves eltype (#2975) (@​kshyatt)
• Remove old set of deps test (#2976) (@​kshyatt)
• Support mul!(Diagonal, A, B) (#2977) (@​kshyatt)
• Let cuTensorNet hard fail again (#2978) (@​kshyatt)
• Remove diagm in favour of GPUArrays (#2979) (@​kshyatt)
• Bump GPUArrays dep (#2984) (@​kshyatt)

Changelog

Sourced from CUDA's changelog.

CUDA.jl release notes

In development: CUDA.jl 4.0

Breaking changes

• CUDNN and CUTENSOR have been split off into separate packages (#1624). This should improve load times, since most users do not rely on the functionality from these modules.

• Binaries (like the CUDA runtime, CUDNN, etc) are now provided through first-class JLL packages (#1629). This makes it possible to build JLLs for applications and libraries that rely on the CUDA runtime. As a result, the JULIA_CUDA_USE_BINARYBUILDER and JULIA_CUDA_VERSION environment variables have been replaced with Preferences.jl-based settings; refer to the documentation for more information.

New features

...

Commits

• c5145ab Remove diagm in favour of GPUArrays (#2979)
• 4db30fe Bump GPUArrays dep (#2984)
• e0ec269 Let cuTensorNet hard fail again [only special] (#2978)
• 0048e5a Add some matrix functions for symm/herm (#2962)
• 11bed80 Support mul!(Diagonal, A, B) (#2977)
• 1d1be49 Ensure diagm preserves eltype (#2975)
• 69b8817 Remove old set of deps test (#2976)
• dc13bbc Bump version (#2969)
• bb7bc44 Add @​inbounds to SparseArrays.nzrange(g::CuSparseDeviceMatrixCSC, col::Intege...
• 272c6ef XsyevBatched! interface accepting 3D StridedCuArray (#2951)
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Updates OpenCL to 0.10.8

Release notes

Sourced from OpenCL's releases.

v0.10.8

OpenCL v0.10.8

Diff since v0.10.7

Merged pull requests:

• SIMD support for math intrinsics (#379) (@​simeonschaub)
• [KA] support unified memory API (#394) (@​simeonschaub)

Closed issues:

• support vectorized math intrinsics (#376)

Commits

• 89ad72f [KA] support unified memory API (#394)
• 11ed992 SIMD support for math intrinsics (#379)
• 8a1785f fix rand(::AbstractRange{Int64}) (#402)
• b18f78a Bump peter-evans/create-or-update-comment from 4 to 5 (#401)
• 67e1cbb Bump peter-evans/find-comment from 3 to 4 (#400)
• 95039b8 Reduce macOS runs on CI (#397)
• 9dd1049 change mangling of pointers (#395)
• d6c49fb Version 0.10.6 (#396)
• 2a36867 Implement device-side RNG (#365)
• b997642 Test improvement follow-up (#387)
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Updates JLArrays to 0.3.0

Commits

• 2b00163 Merge pull request #136 from JuliaGPU/tb/one
• 1049323 Merge pull request #137 from ranocha/update_travis
• 3fdfbd6 Merge pull request #138 from ranocha/update_readme
• 9b97847 Make testsuite easier to reuse.
• ebcf8a0 update link to appveyor
• 058bb69 allow tests using Julia v1.0 (Travis)
• a27dcc4 Enable allowscalar(false) testing for JLArray.
• bb83e17 Restructure the testsuite a little.
• 2439b75 Remove double endlines from license doc.
• e7fce5b Merge pull request #135 from JuliaGPU/tb/one
• Additional commits viewable in compare view

Updates Statistics to 1.11.1

Release notes

Sourced from Statistics's releases.

v1.11.1

Statistics v1.11.1

Diff since v1.11.0

Merged pull requests:

• Make SparseArrays a weak dependency (#134) (@​IanButterworth)
• Recommend mean((x, y)) rather than middle((x, y)) (#147) (@​nalimilan)
• Revert "Prepare standalone package, step 2 (#128)" (#148) (@​nalimilan)
• Prevent overflow in mean(::AbstractRange) and relax type constraint. (#150) (@​chunjiw)
• Document MATLAB behavior in quantile docstring (#152) (@​nalimilan)
• Fix quantile with Date and DateTime (#153) (@​nalimilan)
• relax test for mapreduce_empty (#156) (@​vtjnash)
• Drop support for v1.9 in CI (#157) (@​vtjnash)
• CI: restore v1.9.4 to build matrix (#159) (@​vtjnash)

Closed issues:

• The quantile function can return incorrect results for integer arrays (Int8, Int16, Int32) (#119)

Commits

• 68869af Bump patch for version 1.11.1
• 89f5fc7 Create tagbot.yml
• dc844db CI: restore v1.9.4 to build matrix (#159)
• d0523ae relax test for mapreduce_empty (#156)
• d1c1c42 Drop support for v1.9 in CI (#157)
• bfc6326 Fix quantile with Date and DateTime (#153)
• b8ea3d2 Prevent overflow in mean(::AbstractRange) and relax type constraint. (#150)
• a88ae4f Document MATLAB behavior in quantile docstring (#152)
• 46290a0 Revert "Prepare standalone package, step 2 (#128)" (#148)
• 81a90af make SparseArrays a weak dependency (#134)
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Updates BenchmarkTools to 1.6.3

Release notes

Sourced from BenchmarkTools's releases.

v1.6.3

BenchmarkTools v1.6.3

Diff since v1.6.2

Merged pull requests:

• Use JSON@1.2 (#407) (@​vchuravy)

Commits

• d245d73 Use JSON@1.2 (#407)
• bf334cf Merge pull request #406 from odow/od/fix-json
• 2516b39 Bump version.
• 698d2bd Support JSON 1.0 release (#400)
• 8b64635 Bump julia-actions/julia-format from 3 to 4 (#399)
• 4102e74 Use standard formatting .yml action (#397)
• 377d6d6 Bump actions/checkout from 4 to 5 (#398)
• cddd794 update compat entry format
• 9c97897 Update README.md
• 20fd596 Merge pull request #385 from willow-ahrens/wma/fix-leak
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Updates StochasticDiffEq to 6.84.0

Release notes

Sourced from StochasticDiffEq's releases.

v6.84.0

StochasticDiffEq v6.84.0

Diff since v6.83.0

Merged pull requests:

• Move SDE default algorithm from DifferentialEquations.jl to StochasticDiffEq.jl (#633) (@​ChrisRackauckas-Claude)
• change RNG to Xoshiro, drop RandomNumbers (#634) (@​vyudu)

Commits

• 2d107b8 Update Project.toml
• ffe84e2 Merge pull request #634 from vyudu/change_rng
• 0f90b5d Update SIE_SME.jl
• 6deb5cc Update srk_weak_final_non_diagonal.jl
• 567688f Update test/weak_convergence/srk_weak_final_non_diagonal.jl
• 1f048ff Update srk_weak_diagonal_final.jl
• 8cc7fbc Update srk_weak_final_non_diagonal.jl
• 1e8f997 Update test/weak_convergence/srk_weak_final_non_diagonal.jl
• a106859 Update test/weak_convergence/srk_weak_final_non_diagonal.jl
• 0f64854 Update SIE_SME.jl
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Updates OrdinaryDiffEq to 6.103.0

Release notes

Sourced from OrdinaryDiffEq's releases.

v6.103.0

OrdinaryDiffEq v6.103.0

Diff since v6.102.1

Merged pull requests:

• Reuse integrators in nlstep and NonlinearSolveAlg integrations (#2760) (@​ChrisRackauckas)
• feat: add save_discretes to DEOptions (#2871) (@​AayushSabharwal)
• Add tests for enzyme discrete adjoints (#2872) (@​ChrisRackauckas)
• Update to use DiffEqBase initialization algorithms (#2873) (@​ChrisRackauckas-Claude)
• Rkv76iia (#2878) (@​KeshavVenkatesh)
• Update accepted_kwargs to use Val for SciMLOperators.jl#313 (#2884) (@​ChrisRackauckas-Claude)
• Expand integrators for _initialize_dae! (#2885) (@​ChrisRackauckas)
• Fix IMEX documentation examples to use SplitODEProblem (#2888) (@​ChrisRackauckas-Claude)
• Removing mismatched tableaus (#2896) (@​KeshavVenkatesh)

Closed issues:

• Efficient implementation of Gauss Collocation (#1004)
• Standardize fields in AbstractDiffEqInterpolation (#2750)
• Big slowdown and type instabilities of AD through ODE solver (#2837)
• Automated linearization of ODEProblems with Linearize (#2874)
• Example in OrdinaryDiffEqLinear documentation does not run (#2877)
• using print callback saves solution vector (even when save_everystep=false) (#2882)
• CI tests fail due to precompilation errors in OrdinaryDiffEq.jl et co (#2887)

Commits

• c46429d Bump version from 6.102.1 to 6.103.0
• 01f6703 Update OrdinaryDiffEq.jl
• 701061a Merge pull request #2896 from KeshavVenkatesh/rkv76iia_3
• 3e7b6d6 Removing mismatched tableaus
• 8086a25 Merge pull request #2878 from KeshavVenkatesh/rkv76iia
• 631d34d Update lib/OrdinaryDiffEqVerner/test/ode_verner_tests.jl
• 8bbbe55 Update Project.toml
• 748393b Update lib/OrdinaryDiffEqVerner/test/ode_verner_tests.jl
• fad6914 Update lib/OrdinaryDiffEqVerner/test/ode_verner_tests.jl
• 6f7f733 Update lib/OrdinaryDiffEqVerner/test/ode_verner_tests.jl
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Updates SafeTestsets to 0.1.0

Release notes

Sourced from SafeTestsets's releases.

v0.1.0

SafeTestsets v0.1.0

Diff since v0.0.1

Closed issues:

• Macro in test undefined (#3)
• Using include() with a computed value (#7)

Merged pull requests:

• Name module using testset name (#1) (@​oxinabox)
• Install TagBot as a GitHub Action (#2) (@​JuliaTagBot)
• Update package to moden Julia Project.toml format (#8) (@​staticfloat)
• Make inline testing backward compatible (#9) (@​YingboMa)

Commits

• f7897d5 Update Project.toml
• 4cc3962 Update Project.toml
• 4b6882e Update Project.toml
• 36da15d Merge pull request #9 from YingboMa/myb/onemorelevel
• 08d1b17 Update README.md
• 5f24b73 Make inline testing backward compatible
• 667b675 Merge pull request #8 from staticfloat/sf/modern_project_toml
• ab306b0 Update package to moden Julia Project.toml format
• e553edc Merge pull request #2 from JuliaTagBot/master
• f4714be Install TagBot as a GitHub Action
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Updates Optimization to 5.2.0

Release notes

Sourced from Optimization's releases.

v5.2.0

Optimization v5.2.0

Diff since v5.1.0

Merged pull requests:

• Fix OptimizationIpopt & OptimizationMOI with OptimizationBase@v3 (#1087) (@​SebastianM-C)
• fix Downgrade CI (#1089) (@​SebastianM-C)
• Add explicit allowscallback everywhere (#1090) (@​SebastianM-C)
• bump versions (#1091) (@​SebastianM-C)
• Bump actions/checkout from 4 to 6 (#1096) (@​dependabot[bot])
• Fix docs (#1097) (@​SebastianM-C)
• CompatHelper: add new compat entry for DifferentiationInterface at version 0.7 for package docs, (keep existing compat) (#1099) (@​github-actions[bot])
• CompatHelper: add new compat entry for OptimizationPyCMA at version 1 for package docs, (keep existing compat) (#1100) (@​github-actions[bot])

Closed issues:

• OptimizationOptimJL fails to precompile in Julia 1.10- 1.12 (tested) (#1098)

Changelog

Sourced from Optimization's changelog.

v4 Breaking changes

1. The main change in this breaking release has been the way mini-batching is handled. The data argument in the solve call and the implicit iteration of that in the callback has been removed, the stochastic solvers (Optimisers.jl and Sophia) now handle it explicitly. You would now pass in a DataLoader to OptimizationProblem as the second argument to the objective etc (p) if you want to do minibatching, else for full batch just pass in the full data.

2. The support for extra returns from objective function has been removed. Now the objective should only return a scalar loss value, hence callback doesn't take extra arguments other than the state and loss value.

Commits

• 25ff63f Bump version from 5.1.0 to 5.2.0
• bd01dab Merge pull request #1099 from SciML/compathelper/new_version/2025-11-28-00-30...
• 5d47976 Merge pull request #1100 from SciML/compathelper/new_version/2025-11-28-00-30...
• 3b8aef6 CompatHelper: add new compat entry for OptimizationPyCMA at version 1 for pac...
• b21e3c0 CompatHelper: add new compat entry for DifferentiationInterface at version 0....
• eecb1fd Merge pull request #1097 from SebastianM-C/docs
• a65fd82 bump Manopt for downgrade CI
• 43c9cf2 fix redirects
• 05acc84 Make sure that all optimizers re-export OptimizationBase
• cf96ce9 Add the HolyLabRegistry for QuadDIRECT
• Additional commits viewable in compare view

Updates DiffEqDevTools to 2.48.0

Release notes

Sourced from DiffEqDevTools's releases.

v2.48.0

DiffEqDevTools v2.48.0

Diff since v2.47.0

Merged pull requests:

• Allow NonlinearSolve v4 (#151) (@​ChrisRackauckas)

Commits

• ee9eafe Update Project.toml
• fb4d61d Merge pull request #151 from SciML/ChrisRackauckas-patch-3
• 2211f70 Allow NonlinearSolve v4
• d4547f1 Update Project.toml
• 2aad111 Update Project.toml
• 8dadb64 Merge pull request #150 from SciML/hr/stability_region_for_methods
• 6f6cb42 test for L stability
• 4dcf986 add an implicit method to the tests
• d2d7527 bump version
• 8e9dbbc allow computing the stability function directly from an algorithm
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Updates Zygote to 0.7.10

Release notes

Sourced from Zygote's releases.

v0.7.10

Zygote v0.7.10

Diff since v0.7.9

Merged pull requests:

• Add symmteric accum method for empty gradients (#1577) (@​DhairyaLGandhi)

Commits

• 6295734 Update Project.toml
• 92dab93 chore: add symmteric accum method for empty gradients (#1577)
• a50c429 Update Project.toml
• 6bab1f5 chore: handle when no grads are present (#1576)
• f5db395 Update Project.toml
• 48647d9 Accumulate mutable structs with Ref (#1574)
• 6dc5d2f Import typesof from Base instead of InteractiveUtils (#1569)
• 1b914d9 Update Project.toml
• e9cf749 chore: add unthunk_tangent rule for Ref (#1564)
• 042560f Remove DynamicPPL integration test (#1565)
• Additional commits viewable in compare view

Updates OptimizationOptimisers to 0.3.15

Commits

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Updates pocl_jll to 7.1.0+1

Commits

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