docs: Merge pull request #22 from StructuralGenomicsConsortium/nabin-… #43

	name: code-check

	on:
	push:
	branches: ["main"]
	tags: ["*"]
	pull_request:
	branches:
	- "*"
	- "!gh-pages"

	jobs:
	python-lint-ruff:
	name: Python lint [ruff]
	runs-on: ubuntu-latest
	steps:
	- name: Checkout the code
	uses: actions/checkout@v4

	- name: Install uv
	uses: astral-sh/setup-uv@v5

	- name: Install the project
	run: uv sync --group dev

	- name: Lint
	run: uv run ruff check . --fix

	- name: Format with ruff
	run: uv run ruff format .

	- name: Check if files were modified
	run: \|
	if [ -n "$(git status --porcelain)" ]; then
	echo "❌ Files were reformatted. Please run 'uv run ruff format .' locally and commit the changes."
	echo "Files that need formatting:"
	git status --porcelain
	echo ""
	echo "Diff:"
	git diff
	exit 1
	else
	echo "✅ All files are properly formatted"
	fi

	- name: Type check (if you have mypy)
	run: uv run mypy . \|\| echo "Mypy not configured, skipping..."
	continue-on-error: true

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