From 9bedead9d7cf61d364232920c36b370a48aef724 Mon Sep 17 00:00:00 2001 From: Ralf Grubenmann Date: Mon, 24 Mar 2025 13:12:15 +0100 Subject: [PATCH] feat: add audit table to project --- .../renku_data_services/base_api/auth.py | 1 + .../4fdd23ef602d_create_audit_tables.py | 100 + components/renku_data_services/project/orm.py | 12 + .../renku_data_services/utils/__init__.py | 4 +- .../utils/sanic_pgaudit.py | 121 + poetry.lock | 3058 +++++++++-------- pyproject.toml | 1 + 7 files changed, 1820 insertions(+), 1477 deletions(-) create mode 100644 components/renku_data_services/migrations/versions/4fdd23ef602d_create_audit_tables.py create mode 100644 components/renku_data_services/utils/sanic_pgaudit.py diff --git a/components/renku_data_services/base_api/auth.py b/components/renku_data_services/base_api/auth.py index 16b76b09d..c0c7a02f8 100644 --- a/components/renku_data_services/base_api/auth.py +++ b/components/renku_data_services/base_api/auth.py @@ -33,6 +33,7 @@ def decorator( async def decorated_function(request: Request, *args: _P.args, **kwargs: _P.kwargs) -> _T: token = request.headers.get(authenticator.token_field) user = await authenticator.authenticate(token or "", request) + request.ctx.keycloak_user_id = user.id response = await f(request, user, *args, **kwargs) return response diff --git a/components/renku_data_services/migrations/versions/4fdd23ef602d_create_audit_tables.py b/components/renku_data_services/migrations/versions/4fdd23ef602d_create_audit_tables.py new file mode 100644 index 000000000..384d02e98 --- /dev/null +++ b/components/renku_data_services/migrations/versions/4fdd23ef602d_create_audit_tables.py @@ -0,0 +1,100 @@ +"""create audit tables + +Revision ID: 4fdd23ef602d +Revises: 559b1fc46cfe +Create Date: 2025-03-21 10:46:16.687230 + +""" + +import sqlalchemy as sa +from alembic import op +from sqlalchemy.dialects.postgresql import INET +from sqlalchemy.dialects.postgresql.ext import ExcludeConstraint +from sqlalchemy.dialects.postgresql.json import JSONB + +from renku_data_services.project.orm import ProjectORM +from renku_data_services.utils.sanic_pgaudit import versioning_manager + +# revision identifiers, used by Alembic. +revision = "4fdd23ef602d" +down_revision = "559b1fc46cfe" +branch_labels = None +depends_on = None + + +def upgrade() -> None: + # set up versioning manager tables + op.execute("CREATE EXTENSION IF NOT EXISTS btree_gist") + op.execute("""CREATE OR REPLACE FUNCTION jsonb_change_key_name(data jsonb, old_key text, new_key text) +RETURNS jsonb +IMMUTABLE +LANGUAGE sql +AS $$ + SELECT ('{'||string_agg(to_json(CASE WHEN key = old_key THEN new_key ELSE key END)||':'||value, ',')||'}')::jsonb + FROM ( + SELECT * + FROM jsonb_each(data) + ) t; +$$;""") + op.create_table( + "transaction", + sa.Column("id", sa.BigInteger, primary_key=True), + sa.Column("native_transaction_id", sa.BigInteger), + sa.Column("issued_at", sa.DateTime), + sa.Column("client_addr", INET), + sa.Column("actor_id", sa.Text(), nullable=True), + ExcludeConstraint( + (sa.Column("native_transaction_id"), "="), + ( + sa.func.tsrange( + sa.Column("issued_at") - sa.text("INTERVAL '1 hour'"), + sa.Column("issued_at"), + ), + "&&", + ), + using="gist", + name="transaction_unique_native_tx_id", + ), + schema="common", + ) + op.create_table( + "activity", + sa.Column("id", sa.BigInteger, primary_key=True), + sa.Column("schema_name", sa.Text), + sa.Column("table_name", sa.Text), + sa.Column("relid", sa.Integer), + sa.Column("issued_at", sa.DateTime), + sa.Column("native_transaction_id", sa.BigInteger, index=True), + sa.Column("verb", sa.Text), + sa.Column("old_data", JSONB, default={}, server_default="{}"), + sa.Column("changed_data", JSONB, default={}, server_default="{}"), + sa.Column("transaction_id", sa.BigInteger), + sa.ForeignKeyConstraint( + ["transaction_id"], + ["common.transaction.id"], + ), + schema="common", + ) + op.create_index( + op.f("ix_activity_native_transaction_id"), "activity", ["native_transaction_id"], schema="common", unique=False + ) + + # set up versioning manager triggers + versioning_manager.create_audit_table(None, op.get_bind()) + versioning_manager.create_operators(None, op.get_bind()) + + # manually set up version tracking for projects + # pgsql_audit does this automatically, but with an "table.after_create" trigger, so this doesn't work for + # existing tables + query = versioning_manager.build_audit_table_query( + table=ProjectORM.__table__, exclude_columns=ProjectORM.__versioned__.get("exclude") + ) + op.execute(query) + + +def downgrade() -> None: + # ### commands auto generated by Alembic - please adjust! ### + op.drop_index(op.f("ix_activity_native_transaction_id"), table_name="activity", schema="common") + op.drop_table("activity", schema="common") + op.drop_table("transaction", schema="common") + # ### end Alembic commands ### diff --git a/components/renku_data_services/project/orm.py b/components/renku_data_services/project/orm.py index 9447d5fce..3a6c134c0 100644 --- a/components/renku_data_services/project/orm.py +++ b/components/renku_data_services/project/orm.py @@ -18,12 +18,23 @@ from renku_data_services.project.apispec import Visibility from renku_data_services.secrets.orm import SecretORM from renku_data_services.users.orm import UserORM +from renku_data_services.utils.sanic_pgaudit import versioning_manager from renku_data_services.utils.sqlalchemy import PurePosixPathType, ULIDType if TYPE_CHECKING: from renku_data_services.namespace.orm import EntitySlugORM +class CommonORM(MappedAsDataclass, DeclarativeBase): + """Base class for common schema.""" + + metadata = MetaData(schema="common") + registry = COMMON_ORM_REGISTRY + + +versioning_manager.init(CommonORM) + + class BaseORM(MappedAsDataclass, DeclarativeBase): """Base class for all ORM classes.""" @@ -36,6 +47,7 @@ class ProjectORM(BaseORM): __tablename__ = "projects" __table_args__ = (Index("ix_projects_project_template_id", "template_id"),) + __versioned__ = {"exclude": ["creation_date"]} id: Mapped[ULID] = mapped_column("id", ULIDType, primary_key=True, default_factory=lambda: str(ULID()), init=False) name: Mapped[str] = mapped_column("name", String(99)) visibility: Mapped[Visibility] diff --git a/components/renku_data_services/utils/__init__.py b/components/renku_data_services/utils/__init__.py index bf9f42737..78e54bfed 100644 --- a/components/renku_data_services/utils/__init__.py +++ b/components/renku_data_services/utils/__init__.py @@ -1,5 +1,5 @@ """Package for shared utility functionality.""" -from renku_data_services.utils import core, etag +from renku_data_services.utils import core, cryptography, etag, middleware, sanic_pgaudit, sqlalchemy -__all__ = ["core", "etag"] +__all__ = ["core", "etag", "sanic_pgaudit", "sqlalchemy", "middleware", "cryptography"] diff --git a/components/renku_data_services/utils/sanic_pgaudit.py b/components/renku_data_services/utils/sanic_pgaudit.py new file mode 100644 index 000000000..02128a8c0 --- /dev/null +++ b/components/renku_data_services/utils/sanic_pgaudit.py @@ -0,0 +1,121 @@ +"""Postgres Audit log functionality. + +This mostly just overrides the flask functionality already in pg audit so it works with sanic. +""" + +from contextlib import contextmanager +from copy import copy +from typing import Any, Iterator, reveal_type + +import sqlalchemy as sa +from postgresql_audit.base import ImproperlyConfigured +from postgresql_audit.base import VersioningManager as BaseVersioningManager +from sanic import Request, Sanic +from sqlalchemy import FromClause, orm +from sqlalchemy.dialects.postgresql import array + +from renku_data_services.users.orm import UserORM + + +def assign_actor(base, cls): + """Postgresql_audit by default links on primary key, we customize this because we link on keycloak_id.""" + if hasattr(cls, "actor_id"): + return + + cls.actor_id = sa.Column("actor_id", sa.Text()) + cls.actor = orm.relationship(UserORM, primaryjoin=cls.actor_id == UserORM.keycloak_id, foreign_keys=[cls.actor_id]) + + +class SanicVersioningManager(BaseVersioningManager): + """Custom version manager that integrates with Sanic to get user id.""" + + _actor_cls = "UserORM" + + def get_transaction_values(self): + """Gets values from Sanic for a pgsql_audit transaction.""" + values = copy(self.values) + ctx = Sanic.get_app().ctx + if ctx and hasattr(ctx, "activity_values"): + values.update(ctx.activity_values) + if "actor_id" not in values and self.default_actor_id is not None: + values["actor_id"] = self.default_actor_id + return values + + @property + def default_actor_id(self): + """Get user id from sanic.""" + request = Request.get_current() + + try: + return request.ctx.keycloak_user_id + except AttributeError: + return + + def configure_versioned_classes(self): + """Configures all versioned classes that were collected during instrumentation process. + + Note: we override this so we can use our own `assign_actor` method. + """ + for cls in self.pending_classes: + self.audit_table(cls.__table__, cls.__versioned__.get("exclude")) + assign_actor(self.base, self.transaction_cls) + + def build_audit_table_query(self, table: sa.Table, exclude_columns: list[str] | None = None) -> sa.Select: + """Builds a query that, when executed, turns on audit tracking for a table. + + Note: this is just a copy of the pgsql_audit function, but with support for tables in other schemas. + """ + args: list[Any] = [f"{table.schema}.{table.name}"] + if exclude_columns: + for column in exclude_columns: + if column not in table.c: + raise ImproperlyConfigured( + f"Could not configure versioning. Table '{table.name}'' does " + f"not have a column named '{column}'." + ) + args.append(array(exclude_columns)) + + if self.schema_name is None: + func = sa.func.audit_table + else: + func = getattr(getattr(sa.func, self.schema_name), "audit_table") + return sa.select(func(*args)) + + +def merge_dicts(a: dict[str, Any], b: dict[str, Any]) -> dict[str, Any]: + """Merges two dictionaries. + + This is from the pg audit flask implementation, but can't be imported without also importing flask. + """ + c = copy(a) + c.update(b) + return c + + +@contextmanager +def activity_values(**values: dict[str, Any]) -> Iterator[None]: + """Context manager that allows tracking child changes on the parent. + + Example: + with activity_values(target_id=str(article.id)): + article.tags = [Tag(name='Some tag')] + db.session.commit() + """ + ctx = Sanic.get_app().ctx + if not ctx: + yield # Needed for contextmanager + return + if hasattr(ctx, "activity_values"): + previous_value = ctx.activity_values + 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