diff --git a/Cargo.lock b/Cargo.lock
index a4a61f7..5935871 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -1358,7 +1358,7 @@ dependencies = [
 
 [[package]]
 name = "calibrt"
-version = "0.24.0"
+version = "0.25.0"
 dependencies = [
  "insta",
  "rand 0.8.5",
@@ -3670,7 +3670,7 @@ dependencies = [
 
 [[package]]
 name = "micromzpaf"
-version = "0.24.0"
+version = "0.25.0"
 dependencies = [
  "rustyms",
  "serde",
@@ -5897,7 +5897,7 @@ dependencies = [
 
 [[package]]
 name = "timscentroid"
-version = "0.24.0"
+version = "0.25.0"
 dependencies = [
  "arrow",
  "async-trait",
@@ -5927,7 +5927,7 @@ dependencies = [
 
 [[package]]
 name = "timsquery"
-version = "0.24.0"
+version = "0.25.0"
 dependencies = [
  "arrow",
  "bincode 1.3.3",
@@ -5949,7 +5949,7 @@ dependencies = [
 
 [[package]]
 name = "timsquery_cli"
-version = "0.24.0"
+version = "0.25.0"
 dependencies = [
  "clap",
  "half",
@@ -5968,7 +5968,7 @@ dependencies = [
 
 [[package]]
 name = "timsquery_viewer"
-version = "0.24.0"
+version = "0.25.0"
 dependencies = [
  "clap",
  "eframe",
@@ -6010,7 +6010,7 @@ dependencies = [
 
 [[package]]
 name = "timsseek"
-version = "0.24.0"
+version = "0.25.0"
 dependencies = [
  "calibrt",
  "forust-ml",
@@ -6034,7 +6034,7 @@ dependencies = [
 
 [[package]]
 name = "timsseek_cli"
-version = "0.24.0"
+version = "0.25.0"
 dependencies = [
  "clap",
  "indicatif",
diff --git a/Cargo.toml b/Cargo.toml
index 4c7bd24..53333ef 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -12,7 +12,7 @@ members = [
 ]
 
 [workspace.package]
-version = "0.24.0"
+version = "0.25.0"
 edition = "2024"
 authors = ["Sebastian Paez"]
 license = "Apache-2.0"
diff --git a/pyproject.toml b/pyproject.toml
index 95c6b49..a769fb4 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "timsseek-workspace"
-version = "0.24.0"
+version = "0.25.0"
 requires-python = ">=3.11,<3.13"
 dependencies = [
     "jupyter[python]>=1.1.1",
@@ -55,7 +55,7 @@ packages = [
 ]
 
 [tool.bumpver]
-current_version = "0.24.0"
+current_version = "0.25.0"
 version_pattern = "MAJOR.MINOR.PATCH[-PYTAGNUM]"
 tag_message = "v{new_version}"
 commit_message = "chore: bump version to {new_version}"
diff --git a/python/speclib_builder/pyproject.toml b/python/speclib_builder/pyproject.toml
index 723926f..55a80be 100644
--- a/python/speclib_builder/pyproject.toml
+++ b/python/speclib_builder/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "speclib_builder"
-version = "0.24.0"
+version = "0.25.0"
 requires-python = ">=3.11,<3.13"
 dependencies = [
   "rich",
diff --git a/python/timsseek_rescore/pyproject.toml b/python/timsseek_rescore/pyproject.toml
index 1efdd93..c40f10a 100644
--- a/python/timsseek_rescore/pyproject.toml
+++ b/python/timsseek_rescore/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "timsseek_rescore"
-version = "0.24.0"
+version = "0.25.0"
 requires-python = ">=3.11,<3.13"
 dependencies = [
   "polars",
diff --git a/python/timsseek_rts_receiver/pyproject.toml b/python/timsseek_rts_receiver/pyproject.toml
index 2595d59..b5b000a 100644
--- a/python/timsseek_rts_receiver/pyproject.toml
+++ b/python/timsseek_rts_receiver/pyproject.toml
@@ -1,6 +1,6 @@
 [project]
 name = "timsseek_rts_receiver"
-version = "0.24.0"
+version = "0.25.0"
 requires-python = ">=3.11,<3.13"
 description = "Add your description here"
 dependencies = [
diff --git a/rust/timsquery_cli/src/cli.rs b/rust/timsquery_cli/src/cli.rs
index 9b1ee45..21f6f13 100644
--- a/rust/timsquery_cli/src/cli.rs
+++ b/rust/timsquery_cli/src/cli.rs
@@ -7,6 +7,14 @@ use std::path::PathBuf;
 #[derive(Parser, Debug)]
 #[command(author, version, about, long_about = None)]
 pub struct Args {
+    /// Increase logging verbosity (can be repeated: -v for debug, -vv for trace)
+    #[arg(short, long, action = clap::ArgAction::Count, global = true)]
+    pub verbose: u8,
+
+    /// Decrease logging verbosity (can be repeated: -q for warn, -qq for error)
+    #[arg(short, long, action = clap::ArgAction::Count, global = true)]
+    pub quiet: u8,
+
     #[command(subcommand)]
     pub command: Option<Commands>,
 }
diff --git a/rust/timsquery_cli/src/main.rs b/rust/timsquery_cli/src/main.rs
index 7b8c259..41554f8 100644
--- a/rust/timsquery_cli/src/main.rs
+++ b/rust/timsquery_cli/src/main.rs
@@ -30,14 +30,39 @@ use mimalloc::MiMalloc;
 #[global_allocator]
 static GLOBAL: MiMalloc = MiMalloc;
 
+/// Converts verbosity flags to a log level string.
+/// Returns the log level based on verbose/quiet counts.
+/// If RUST_LOG is set, it takes precedence.
+fn get_log_level(verbose: u8, quiet: u8) -> String {
+    // RUST_LOG environment variable takes precedence
+    if std::env::var("RUST_LOG").is_ok() {
+        return std::env::var("RUST_LOG").unwrap();
+    }
+
+    // Calculate effective verbosity: positive = more verbose, negative = more quiet
+    let effective = verbose as i8 - quiet as i8;
+
+    match effective {
+        2.. => "trace".to_string(),
+        1 => "debug".to_string(),
+        0 => "info".to_string(),
+        -1 => "warn".to_string(),
+        _ => "error".to_string(),
+    }
+}
+
 fn main() -> Result<(), CliError> {
-    let env_filter = EnvFilter::try_from_default_env().unwrap_or_else(|_| EnvFilter::new("info"));
+    let args = Args::parse();
+
+    let log_level = get_log_level(args.verbose, args.quiet);
+    let env_filter = EnvFilter::builder()
+        .with_default_directive(log_level.parse().unwrap())
+        .from_env_lossy();
     let subscriber = Registry::default()
         .with(env_filter)
         .with(tracing_subscriber::fmt::layer().with_span_events(FmtSpan::CLOSE));
 
     set_global_default(subscriber).expect("Setting default subscriber failed");
-    let args = Args::parse();
 
     match args.command {
         Some(Commands::QueryIndex(args)) => main_query_index(args)?,
diff --git a/rust/timsquery_viewer/src/cli.rs b/rust/timsquery_viewer/src/cli.rs
index 4896686..9e89669 100644
--- a/rust/timsquery_viewer/src/cli.rs
+++ b/rust/timsquery_viewer/src/cli.rs
@@ -4,6 +4,14 @@ use std::path::PathBuf;
 #[derive(Parser, Debug)]
 #[command(author, version, about, long_about = None)]
 pub struct Cli {
+    /// Increase logging verbosity (can be repeated: -v for debug, -vv for trace)
+    #[arg(short, long, action = clap::ArgAction::Count, global = true)]
+    pub verbose: u8,
+
+    /// Decrease logging verbosity (can be repeated: -q for warn, -qq for error)
+    #[arg(short, long, action = clap::ArgAction::Count, global = true)]
+    pub quiet: u8,
+
     #[arg(
         long,
         value_name = "FILE",
diff --git a/rust/timsquery_viewer/src/main.rs b/rust/timsquery_viewer/src/main.rs
index 733c905..aff59f5 100644
--- a/rust/timsquery_viewer/src/main.rs
+++ b/rust/timsquery_viewer/src/main.rs
@@ -25,34 +25,55 @@ use mimalloc::MiMalloc;
 #[global_allocator]
 static GLOBAL: MiMalloc = MiMalloc;
 
-fn setup_logger() {
-    let app_level = std::env::var("RUST_LOG").unwrap_or_else(|_| "info".to_string());
-    let env_filter = match EnvFilter::builder().parse(&app_level) {
+/// Converts verbosity flags to a log level string.
+/// Returns the log level based on verbose/quiet counts.
+/// If RUST_LOG is set, it takes precedence.
+fn get_log_level(verbose: u8, quiet: u8) -> String {
+    // RUST_LOG environment variable takes precedence
+    if std::env::var("RUST_LOG").is_ok() {
+        return std::env::var("RUST_LOG").unwrap();
+    }
+
+    // Calculate effective verbosity: positive = more verbose, negative = more quiet
+    let effective = verbose as i8 - quiet as i8;
+
+    match effective {
+        2.. => "trace".to_string(),
+        1 => "debug".to_string(),
+        0 => "info".to_string(),
+        -1 => "warn".to_string(),
+        _ => "error".to_string(),
+    }
+}
+
+fn setup_logger(verbose: u8, quiet: u8) {
+    let log_level = get_log_level(verbose, quiet);
+    let env_filter = match EnvFilter::builder().parse(&log_level) {
         Ok(filter) => filter,
         Err(_) => {
             let mut warning_msg = String::new();
             let _ = writeln!(
                 &mut warning_msg,
-                "Warning: Invalid RUST_LOG value: {}. Falling back to 'info'.",
-                app_level
+                "Warning: Invalid log level: {}. Falling back to 'info'.",
+                log_level
             );
             eprintln!("{}", warning_msg);
             EnvFilter::new("info")
         }
     };
 
-    // 5. Initialize Subscriber
+    // Initialize Subscriber
     let subscriber = Registry::default()
         .with(env_filter)
         .with(tracing_subscriber::fmt::layer().with_span_events(FmtSpan::CLOSE));
 
-    subscriber.init(); // simpler than set_global_default + expect
+    subscriber.init();
 }
 
 fn main() -> eframe::Result {
     let args = cli::Cli::parse();
 
-    setup_logger();
+    setup_logger(args.verbose, args.quiet);
     let options = eframe::NativeOptions {
         viewport: egui::ViewportBuilder::default()
             .with_inner_size([1400.0, 800.0])
diff --git a/rust/timsseek_cli/src/cli.rs b/rust/timsseek_cli/src/cli.rs
index d56c80f..70657c4 100644
--- a/rust/timsseek_cli/src/cli.rs
+++ b/rust/timsseek_cli/src/cli.rs
@@ -5,6 +5,14 @@ use timsseek::DecoyStrategy;
 #[derive(Parser, Debug)]
 #[command(author, version, about, long_about = None)]
 pub struct Cli {
+    /// Increase logging verbosity (can be repeated: -v for debug, -vv for trace)
+    #[arg(short, long, action = clap::ArgAction::Count, global = true)]
+    pub verbose: u8,
+
+    /// Decrease logging verbosity (can be repeated: -q for warn, -qq for error)
+    #[arg(short, long, action = clap::ArgAction::Count, global = true)]
+    pub quiet: u8,
+
     /// Path to the JSON configuration file (optional, uses defaults if not provided)
     #[arg(short, long)]
     pub config: Option<PathBuf>,
diff --git a/rust/timsseek_cli/src/main.rs b/rust/timsseek_cli/src/main.rs
index 50097ee..8a4f839 100644
--- a/rust/timsseek_cli/src/main.rs
+++ b/rust/timsseek_cli/src/main.rs
@@ -309,10 +309,34 @@ fn process_single_file(
     Ok(())
 }
 
+/// Converts verbosity flags to a log level string.
+/// Returns the log level based on verbose/quiet counts.
+/// If RUST_LOG is set, it takes precedence.
+fn get_log_level(verbose: u8, quiet: u8) -> String {
+    // RUST_LOG environment variable takes precedence
+    if std::env::var("RUST_LOG").is_ok() {
+        return std::env::var("RUST_LOG").unwrap();
+    }
+
+    // Calculate effective verbosity: positive = more verbose, negative = more quiet
+    let effective = verbose as i8 - quiet as i8;
+
+    match effective {
+        2.. => "trace".to_string(),
+        1 => "debug".to_string(),
+        0 => "info".to_string(),
+        -1 => "warn".to_string(),
+        _ => "error".to_string(),
+    }
+}
+
 fn main() -> std::result::Result<(), errors::CliError> {
+    // Parse command line arguments first to get verbosity flags
+    let args = Cli::parse();
+
+    let log_level = get_log_level(args.verbose, args.quiet);
     let fmt_filter = EnvFilter::builder()
-        .with_default_directive("info".parse().unwrap())
-        .with_env_var("RUST_LOG")
+        .with_default_directive(log_level.parse().unwrap())
         .from_env_lossy();
 
     #[cfg(feature = "instrumentation")]
@@ -356,9 +380,6 @@ fn main() -> std::result::Result<(), errors::CliError> {
 
     reg.init();
 
-    // Parse command line arguments
-    let args = Cli::parse();
-
     // Load and parse configuration, or use defaults
     let mut config = match args.config {
         Some(ref config_path) => {
diff --git a/rust/timsseek_cli/src/sample_speclib.rs b/rust/timsseek_cli/src/sample_speclib.rs
index ec7a27f..a824943 100644
--- a/rust/timsseek_cli/src/sample_speclib.rs
+++ b/rust/timsseek_cli/src/sample_speclib.rs
@@ -8,10 +8,22 @@ use clap::{
 };
 // use serde_json::to_string_pretty;
 use timsseek::Speclib;
+use tracing_subscriber::EnvFilter;
+use tracing_subscriber::fmt::format::FmtSpan;
+use tracing_subscriber::prelude::*;
+use tracing_subscriber::registry::Registry;
 
 #[derive(Parser)]
 #[command(version, about, long_about = None)]
 struct Cli {
+    /// Increase logging verbosity (can be repeated: -v for debug, -vv for trace)
+    #[arg(short, long, action = clap::ArgAction::Count, global = true)]
+    verbose: u8,
+
+    /// Decrease logging verbosity (can be repeated: -q for warn, -qq for error)
+    #[arg(short, long, action = clap::ArgAction::Count, global = true)]
+    quiet: u8,
+
     #[command(subcommand)]
     command: SubCommands,
 }
@@ -41,19 +53,44 @@ fn parse_speclib(speclib_file: &str) -> Result<(), timsseek::errors::LibraryRead
     Ok(())
 }
 
+/// Converts verbosity flags to a log level string.
+/// Returns the log level based on verbose/quiet counts.
+/// If RUST_LOG is set, it takes precedence.
+fn get_log_level(verbose: u8, quiet: u8) -> String {
+    // RUST_LOG environment variable takes precedence
+    if std::env::var("RUST_LOG").is_ok() {
+        return std::env::var("RUST_LOG").unwrap();
+    }
+
+    // Calculate effective verbosity: positive = more verbose, negative = more quiet
+    let effective = verbose as i8 - quiet as i8;
+
+    match effective {
+        2.. => "trace".to_string(),
+        1 => "debug".to_string(),
+        0 => "info".to_string(),
+        -1 => "warn".to_string(),
+        _ => "error".to_string(),
+    }
+}
+
+fn setup_logger(verbose: u8, quiet: u8) {
+    let log_level = get_log_level(verbose, quiet);
+    let env_filter = EnvFilter::builder()
+        .with_default_directive(log_level.parse().unwrap())
+        .from_env_lossy();
+    let subscriber = Registry::default()
+        .with(env_filter)
+        .with(tracing_subscriber::fmt::layer().with_span_events(FmtSpan::CLOSE));
+    subscriber.init();
+}
+
 fn main() -> Result<(), timsseek::errors::LibraryReadingError> {
-    // This is a placeholder for the main function.
-    // The actual implementation would depend on the specific requirements of the application.
     let cli = Cli::parse();
+    setup_logger(cli.verbose, cli.quiet);
 
     match &cli.command {
-        // SubCommands::Sample => {
-        //     // Generate a sample speclib
-        //     generate_sample_speclib();
-        //     Ok(())
-        // }
         SubCommands::Parse { speclib_file } => {
-            // Parse the provided speclib file
             parse_speclib(speclib_file)?;
             Ok(())
         }
diff --git a/scripts/release.sh b/scripts/release.sh
new file mode 100644
index 0000000..6cf989f
--- /dev/null
+++ b/scripts/release.sh
@@ -0,0 +1,98 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+# Helper script to tag and push a release for the current version
+# Checks that no tag or release already exists before proceeding
+#
+# Usage: bash scripts/release.sh
+
+# Colors for output
+RED='\033[0;31m'
+GREEN='\033[0;32m'
+YELLOW='\033[1;33m'
+NC='\033[0m' # No Color
+
+info() { echo -e "${GREEN}[INFO]${NC} $1"; }
+warn() { echo -e "${YELLOW}[WARN]${NC} $1"; }
+error() { echo -e "${RED}[ERROR]${NC} $1"; exit 1; }
+
+# Check we're on main branch
+CURRENT_BRANCH=$(git branch --show-current)
+if [[ "$CURRENT_BRANCH" != "main" ]]; then
+    warn "Not on main branch (currently on '${CURRENT_BRANCH}')"
+    read -p "Switch to main and pull latest? [y/N] " -n 1 -r
+    echo ""
+    if [[ $REPLY =~ ^[Yy]$ ]]; then
+        info "Switching to main..."
+        git checkout main
+        info "Pulling latest changes..."
+        git pull origin main
+    else
+        error "Releases should be created from the main branch"
+    fi
+fi
+
+# Ensure working directory is clean
+if [[ -n $(git status --porcelain) ]]; then
+    warn "Working directory has uncommitted changes"
+    git status --short
+    read -p "Continue anyway? [y/N] " -n 1 -r
+    echo ""
+    if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+        error "Aborted - please commit or stash changes first"
+    fi
+fi
+
+# Get current version from bumpver
+VERSION=$(uv run bumpver show 2>/dev/null | grep "Current Version:" | awk '{print $3}')
+if [[ -z "$VERSION" ]]; then
+    error "Could not determine current version from bumpver"
+fi
+
+TAG="v${VERSION}"
+info "Current version: ${VERSION}"
+info "Tag to create: ${TAG}"
+
+# Check if local tag exists
+if git tag -l "$TAG" | grep -q "^${TAG}$"; then
+    error "Local tag '${TAG}' already exists"
+fi
+info "No local tag '${TAG}' found"
+
+# Check if remote tag exists
+if git ls-remote --tags origin "$TAG" 2>/dev/null | grep -q "$TAG"; then
+    error "Remote tag '${TAG}' already exists on origin"
+fi
+info "No remote tag '${TAG}' found"
+
+# Check if GitHub release exists (requires gh CLI)
+if command -v gh &> /dev/null; then
+    if gh release view "$TAG" &> /dev/null; then
+        error "GitHub release '${TAG}' already exists"
+    fi
+    info "No GitHub release '${TAG}' found"
+else
+    warn "gh CLI not found, skipping GitHub release check"
+fi
+
+# Confirm with user
+echo ""
+echo -e "${YELLOW}Ready to create and push tag '${TAG}'${NC}"
+read -p "Proceed? [y/N] " -n 1 -r
+echo ""
+
+if [[ ! $REPLY =~ ^[Yy]$ ]]; then
+    info "Aborted by user"
+    exit 0
+fi
+
+# Create and push the tag
+info "Creating tag '${TAG}'..."
+git tag -a "$TAG" -m "Release ${VERSION}"
+
+info "Pushing tag '${TAG}' to origin..."
+git push origin "$TAG"
+
+echo ""
+info "Successfully created and pushed tag '${TAG}'"
+info "GitHub Actions will now build and create the release"
diff --git a/uv.lock b/uv.lock
new file mode 100644
index 0000000..a8d2661
--- /dev/null
+++ b/uv.lock
@@ -0,0 +1,3288 @@
+version = 1
+revision = 3
+requires-python = ">=3.11, <3.13"
+resolution-markers = [
+    "python_full_version >= '3.12'",
+    "python_full_version < '3.12'",
+]
+
+[manifest]
+members = [
+    "speclib-builder",
+    "timsseek-rescore",
+    "timsseek-rts-receiver",
+    "timsseek-workspace",
+]
+
+[[package]]
+name = "altair"
+version = "6.0.0"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "jinja2" },
+    { name = "jsonschema" },
+    { name = "narwhals" },
+    { name = "packaging" },
+    { name = "typing-extensions" },
+]
+sdist = { url = "https://files.pythonhosted.org/packages/f7/c0/184a89bd5feba14ff3c41cfaf1dd8a82c05f5ceedbc92145e17042eb08a4/altair-6.0.0.tar.gz", hash = "sha256:614bf5ecbe2337347b590afb111929aa9c16c9527c4887d96c9bc7f6640756b4", size = 763834, upload-time = "2025-11-12T08:59:11.519Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/db/33/ef2f2409450ef6daa61459d5de5c08128e7d3edb773fefd0a324d1310238/altair-6.0.0-py3-none-any.whl", hash = "sha256:09ae95b53d5fe5b16987dccc785a7af8588f2dca50de1e7a156efa8a461515f8", size = 795410, upload-time = "2025-11-12T08:59:09.804Z" },
+]
+
+[[package]]
+name = "annotated-types"
+version = "0.7.0"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/ee/67/531ea369ba64dcff5ec9c3402f9f51bf748cec26dde048a2f973a4eea7f5/annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89", size = 16081, upload-time = "2024-05-20T21:33:25.928Z" }
+wheels = [
+    { url = "https://files.pythonhosted.org/packages/78/b6/6307fbef88d9b5ee7421e68d78a9f162e0da4900bc5f5793f6d3d0e34fb8/annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53", size = 13643, upload-time = "2024-05-20T21:33:24.1Z" },
+]
+
+[[package]]
+name = "anyio"
+version = "4.12.1"
+source = { registry = "https://pypi.org/simple" }
+dependencies = [
+    { name = "idna" },
+    { name = "typing-extensions" },
+]
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