diff --git a/R/clean_ProteomeDiscoverer.R b/R/clean_ProteomeDiscoverer.R index 4feba663..2f3e5992 100644 --- a/R/clean_ProteomeDiscoverer.R +++ b/R/clean_ProteomeDiscoverer.R @@ -131,6 +131,7 @@ pd_input = pd_input[toupper(QuanInfo) == 'UNIQUE', ] } } + pd_input = pd_input[, !(colnames(pd_input) %in% "QuanInfo"), with = FALSE] pd_input } diff --git a/inst/tinytest/test_cleanRaw.R b/inst/tinytest/test_cleanRaw.R index aadf08be..e5e63e98 100644 --- a/inst/tinytest/test_cleanRaw.R +++ b/inst/tinytest/test_cleanRaw.R @@ -146,7 +146,7 @@ expect_error(MSstatsConvert::MSstatsClean(pdtmt_import, remove_shared = TRUE, intensity_columns_regexp = "Nothing")) expect_equal( - ncol(pdtmt_cleaned), 11 + ncol(pdtmt_cleaned), 10 ) expect_true(nrow(pdtmt_cleaned) > 0) # Progenesis diff --git a/inst/tinytest/test_clean_ProteomeDiscoverer.R b/inst/tinytest/test_clean_ProteomeDiscoverer.R index 4d88f0e7..c6c03f74 100644 --- a/inst/tinytest/test_clean_ProteomeDiscoverer.R +++ b/inst/tinytest/test_clean_ProteomeDiscoverer.R @@ -1,6 +1,6 @@ .testHappyPath = function(input) { output = MSstatsConvert:::.cleanRawPDTMT(input) - expect_equal(ncol(output), 11) + expect_equal(ncol(output), 10) expect_true(nrow(output) > 0) expected_column_names = c( "ProteinName", @@ -9,7 +9,6 @@ "PrecursorCharge", "IonsScore", "Run", - "QuanInfo", "IsolationInterference", "PSM", "Channel",