diff --git a/README.md b/README.md index bed0b45..2f8316e 100644 --- a/README.md +++ b/README.md @@ -18,28 +18,29 @@ PathoROB contains **four datasets** covering 28 biological classes from 34 medic | Rank | Foundation Model | TCGA 2x2 | Camelyon | Tolkach ESCA | Average (↓) | |------|:------------------------|---------:|---------:|-------------:|------------:| -| 1 | Virchow2 | 0.822 | 0.806 | 0.955 | 0.861 | -| 2 | CONCHv1.5 | 0.832 | 0.774 | 0.951 | 0.852 | -| 3 | Atlas | 0.826 | 0.785 | 0.938 | 0.850 | -| 4 | Virchow | 0.761 | 0.751 | 0.932 | 0.815 | -| 5 | H0-mini | 0.794 | 0.718 | 0.932 | 0.815 | -| 6 | Conch | 0.824 | 0.662 | 0.951 | 0.812 | -| 7 | H-optimus-0 | 0.812 | 0.705 | 0.918 | 0.812 | -| 8 | UNI2-h | 0.803 | 0.544 | 0.923 | 0.757 | -| 9 | MUSK | 0.727 | 0.467 | 0.928 | 0.707 | -| 10 | HIPT | 0.614 | 0.649 | 0.726 | 0.663 | -| 11 | Prov-GigaPath | 0.738 | 0.399 | 0.754 | 0.630 | -| 12 | Kaiko ViT-B/8 | 0.763 | 0.147 | 0.896 | 0.602 | -| 13 | UNI | 0.747 | 0.145 | 0.902 | 0.598 | -| 14 | RETCCL | 0.593 | 0.318 | 0.878 | 0.596 | -| 15 | CTransPath | 0.652 | 0.106 | 0.872 | 0.543 | -| 16 | Kang-DINO | 0.661 | 0.043 | 0.832 | 0.512 | -| 17 | RudolfV | 0.587 | 0.184 | 0.695 | 0.489 | -| 18 | Phikon | 0.623 | 0.011 | 0.795 | 0.476 | -| 19 | Phikon-v2 | 0.619 | 0.019 | 0.768 | 0.469 | -| 20 | Ciga | 0.511 | 0.135 | 0.693 | 0.446 | - -All results were computed as part of our benchmarking study. For details as well as for the APD and clustering score results, please check our [preprint](https://arxiv.org/abs/2507.17845). +| 1 | Atlas 2 | 0.879 | 0.940 | 0.964 | 0.928 | +| 2 | Virchow2 | 0.822 | 0.806 | 0.955 | 0.861 | +| 3 | CONCHv1.5 | 0.832 | 0.774 | 0.951 | 0.852 | +| 4 | Atlas | 0.826 | 0.785 | 0.938 | 0.850 | +| 5 | Virchow | 0.761 | 0.751 | 0.932 | 0.815 | +| 6 | H0-mini | 0.794 | 0.718 | 0.932 | 0.815 | +| 7 | Conch | 0.824 | 0.662 | 0.951 | 0.812 | +| 8 | H-optimus-0 | 0.812 | 0.705 | 0.918 | 0.812 | +| 9 | UNI2-h | 0.803 | 0.544 | 0.923 | 0.757 | +| 10 | MUSK | 0.727 | 0.467 | 0.928 | 0.707 | +| 11 | HIPT | 0.614 | 0.649 | 0.726 | 0.663 | +| 12 | Prov-GigaPath | 0.738 | 0.399 | 0.754 | 0.630 | +| 13 | Kaiko ViT-B/8 | 0.763 | 0.147 | 0.896 | 0.602 | +| 14 | UNI | 0.747 | 0.145 | 0.902 | 0.598 | +| 15 | RETCCL | 0.593 | 0.318 | 0.878 | 0.596 | +| 16 | CTransPath | 0.652 | 0.106 | 0.872 | 0.543 | +| 17 | Kang-DINO | 0.661 | 0.043 | 0.832 | 0.512 | +| 18 | RudolfV | 0.587 | 0.184 | 0.695 | 0.489 | +| 19 | Phikon | 0.623 | 0.011 | 0.795 | 0.476 | +| 20 | Phikon-v2 | 0.619 | 0.019 | 0.768 | 0.469 | +| 21 | Ciga | 0.511 | 0.135 | 0.693 | 0.446 | + +All results were computed as part of our benchmarking study except for [Atlas 2](https://arxiv.org/pdf/2601.05148) where results were taken from the paper. For details as well as for the APD and clustering score results, please check our [preprint](https://arxiv.org/abs/2507.17845). > [!Note] > If you want your model to be added, please [contact](#contact) us.