use Boutiques implementation of FSL binarize in FSL binarize example #80
Description
- Use the following boutiques descriptor for
fsl_binarize:
https://github.com/big-data-lab-team/sim/blob/develop/sim/tests/fslbin_demo/fslmaths-bin.json - Create a SparkImage object https://github.com/big-data-lab-team/sim/blob/develop/sim/SparkImage.py
- Add options
thresholdto SparkImage.option_ids - Write the invocation using
SparkImage.write_invocation - Run the command using
SparkImage.bosh_exec