added display composite

Author: cleterrier

HyperStack_to_Montage.ijm

@@ -1,46 +1,51 @@
+// Christophe Leterrier 18-04-2018
 macro HyperStack_to_Montage {
 
 //	setBatchMode(true);
 	margin = 5;
-	
+
+
+	Stack.setDisplayMode("composite");
 	inID = getImageID();
 	inTitle = getTitle();
 	getDimensions(inWidth, inHeight, inChannels, inSlices, inFrames);
 
+
+
 	outLabels = getLabels(inID);
 
 
-	
+
 	selectImage(inID);
 	run("Stack to RGB", "slices keep");
 	rename("RGB");
 	rgbID = getImageID();
-	
+
 	selectImage(inID);
 	splitIDs = newArray(inChannels);
 	splitTitles = newArray(inChannels);
-	
+
 	for (i = 0; i < inChannels; i++) {
 		selectImage(inID);
 		currC = i + 1;
 		run("Duplicate...", "duplicate channels=" + currC);
 		splitIDs[i] = getImageID();
 		splitTitles[i] = getTitle();
-		
+
 		run("Grays");
 		run("RGB Color");
 		run("Canvas Size...", "width=" + (inWidth + margin)+ " height=" + inHeight + " position=Center-Left");
 		makeRectangle(inWidth, 0, margin, inHeight);
 		setForegroundColor(255, 255, 255);
 		run("Fill", "stack");
-		
+
 		if (i > 0) {
 			run("Combine...", "stack1=[" + splitTitles[i-1] + "] stack2=[" + splitTitles[i] + "]");
 			rename(splitTitles[i]);
 			combineID = getImageID();
 		}
 	}
-	
+
 	run("Combine...", "stack1=[" + splitTitles[inChannels - 1] + "] stack2=[RGB]");
 	finalID = getImageID();
 	rename(stripExt(inTitle) + "_Montage.tif");
@@ -49,8 +54,8 @@ macro HyperStack_to_Montage {
 		Stack.setPosition(1, j + 1, 1);
 		setMetadata("Label", outLabels[j]);
 	}
-	Stack.setPosition(1, 1, 1);	
-	
+	Stack.setPosition(1, 1, 1);
+
 //	setBatchMode("exit and display");
 
 }