From 1800c9a6b85966834980ebe7ca240715938e0629 Mon Sep 17 00:00:00 2001
From: Jeffrey Curtis <jcurtis2@illinois.edu>
Date: Mon, 8 Jun 2026 14:13:51 -0500
Subject: [PATCH 1/2] update checkout version. update codecov to avoid issues

---
 .github/actions/codecov/action.yml          | 2 +-
 .github/workflows/camp.yml                  | 2 +-
 .github/workflows/cloud_parcel.yml          | 2 +-
 .github/workflows/doc.yml                   | 2 +-
 .github/workflows/images.yml                | 2 +-
 .github/workflows/main.yml                  | 2 +-
 .github/workflows/mpi.yml                   | 2 +-
 .github/workflows/tchem.yml.temporarily_off | 2 +-
 8 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/.github/actions/codecov/action.yml b/.github/actions/codecov/action.yml
index 7ffabe946..e5991ec71 100644
--- a/.github/actions/codecov/action.yml
+++ b/.github/actions/codecov/action.yml
@@ -14,7 +14,7 @@ runs:
       shell: bash
 
     - name: Upload coverage report to codecov.io
-      uses: codecov/codecov-action@v5.5.0
+      uses: codecov/codecov-action@v6
       with:
         token: ${{ inputs.codecov_token }}
         fail_ci_if_error: true
diff --git a/.github/workflows/camp.yml b/.github/workflows/camp.yml
index 0eb399891..6791cffa4 100644
--- a/.github/workflows/camp.yml
+++ b/.github/workflows/camp.yml
@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v6
     - name: Build the testing docker image
       run: docker build -f Dockerfile.camp -t partmc-test .
     - name: Run the tests in the docker container
diff --git a/.github/workflows/cloud_parcel.yml b/.github/workflows/cloud_parcel.yml
index 7a4336755..e2f3c5d7b 100644
--- a/.github/workflows/cloud_parcel.yml
+++ b/.github/workflows/cloud_parcel.yml
@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v6
     - name: Build the testing docker image
       run: docker build -f Dockerfile.cloud_parcel -t partmc-test .
     - name: Run the tests in the docker container
diff --git a/.github/workflows/doc.yml b/.github/workflows/doc.yml
index 7145e4517..eccaca8ac 100644
--- a/.github/workflows/doc.yml
+++ b/.github/workflows/doc.yml
@@ -14,7 +14,7 @@ jobs:
       contents: write
 
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v6
     - name: Build the testing docker image
       run: docker build -t partmc-doc -f Dockerfile.doc .
     - name: Run container to generate docs
diff --git a/.github/workflows/images.yml b/.github/workflows/images.yml
index f4ba9a13b..7afb21e68 100644
--- a/.github/workflows/images.yml
+++ b/.github/workflows/images.yml
@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
-        uses: actions/checkout@v2 # https://github.com/marketplace/actions/checkout
+        uses: actions/checkout@v6 # https://github.com/marketplace/actions/checkout
         with:
           fetch-depth: 0
       - name: Set up QEMU
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 895b995d3..9c3596eda 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v6
     - name: Build the testing docker image
       run: docker build -t partmc-test .
     - name: Run the tests in the docker container
diff --git a/.github/workflows/mpi.yml b/.github/workflows/mpi.yml
index 95f5a04a2..afe4ad9fc 100644
--- a/.github/workflows/mpi.yml
+++ b/.github/workflows/mpi.yml
@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v6
     - name: Build the testing docker image
       run: docker build -f Dockerfile.mpi -t partmc-test . 
     - name: Run the tests in the docker container
diff --git a/.github/workflows/tchem.yml.temporarily_off b/.github/workflows/tchem.yml.temporarily_off
index 176afab2c..29e819f79 100644
--- a/.github/workflows/tchem.yml.temporarily_off
+++ b/.github/workflows/tchem.yml.temporarily_off
@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v1
+    - uses: actions/checkout@v6
     - name: Build the testing docker image
       run: docker build -f Dockerfile.tchem -t partmc-test .
     - name: Run the tests in the docker container

From c7d2b776ff4d525e1dbb9d09fcbca05bd5a22aa1 Mon Sep 17 00:00:00 2001
From: Jeffrey Curtis <jcurtis2@illinois.edu>
Date: Mon, 8 Jun 2026 14:16:03 -0500
Subject: [PATCH 2/2] add codecov.yml for configuring settings

---
 codecov.yml | 10 ++++++++++
 1 file changed, 10 insertions(+)
 create mode 100644 codecov.yml

diff --git a/codecov.yml b/codecov.yml
new file mode 100644
index 000000000..58d1399af
--- /dev/null
+++ b/codecov.yml
@@ -0,0 +1,10 @@
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: 1%
+    patch:
+      default:
+        target: auto
+        threshold: 1%