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Update Display_Probe_Track.m
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SHARP-Track/Display_Probe_Track.m

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@@ -156,20 +156,13 @@
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out_of_brain = false;
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while ~(ann==1 && out_of_brain) % && distance_stepped > .5*active_probe_length)
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m = m-p; % step 10um, backwards up the track
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if strcmp(plane,'coronal')
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ann = av_plot(round(m(1)),round(m(2)),round(m(3))); %until hitting the top
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elseif strcmp(plane,'sagittal')
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ann = av_plot(round(m(3)),round(m(2)),round(m(1))); %until hitting the top
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elseif strcmp(plane,'transverse')
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ann = av_plot(round(m(2)),round(m(3)),round(m(1))); %until hitting the top
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end
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if strcmp(st.safe_name(ann), 'root')
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% make sure this isn't just a 'root' area within the brain
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m_further_up = m - p*20; % is there more brain 200 microns up along the track?

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