From 9b0fec193d58d1d45519289037fe57647fffa1dd Mon Sep 17 00:00:00 2001 From: Stuart Wheater Date: Fri, 21 Nov 2025 13:08:41 +0000 Subject: [PATCH 1/6] Fix version --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index d00d8a10..bc5e3973 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -5,7 +5,7 @@ Description: Base 'DataSHIELD' functions for the server side. 'DataSHIELD' is a been designed to only share non disclosive summary statistics, with built in automated output checking based on statistical disclosure control. With data sites setting the threshold values for the automated output checks. For more details, see 'citation("dsBase")'. -Version: 6.3.4 +Version: 6.3.5.9000 Authors@R: c(person(given = "Paul", family = "Burton", role = c("aut"), From 2a3b3feee138a0b975066118dbc5223a6b6223fa Mon Sep 17 00:00:00 2001 From: Stuart Wheater Date: Fri, 21 Nov 2025 13:13:33 +0000 Subject: [PATCH 2/6] Update to docs --- docs/404.html | 4 +- docs/LICENSE.html | 4 +- docs/authors.html | 8 +- docs/index.html | 4 +- docs/pkgdown.yml | 4 +- docs/reference/BooleDS.html | 4 +- docs/reference/absDS.html | 4 +- docs/reference/asCharacterDS.html | 4 +- docs/reference/asDataMatrixDS.html | 4 +- docs/reference/asFactorDS1.html | 4 +- docs/reference/asFactorDS2.html | 4 +- docs/reference/asFactorSimpleDS.html | 4 +- docs/reference/asIntegerDS.html | 4 +- docs/reference/asListDS.html | 4 +- docs/reference/asLogicalDS.html | 4 +- docs/reference/asMatrixDS.html | 4 +- docs/reference/asNumericDS.html | 4 +- docs/reference/aucDS.html | 4 +- docs/reference/blackBoxDS.html | 4 +- docs/reference/blackBoxRanksDS.html | 4 +- docs/reference/boxPlotGGDS.html | 4 +- .../reference/boxPlotGG_data_TreatmentDS.html | 4 +- .../boxPlotGG_data_Treatment_numericDS.html | 4 +- docs/reference/bp_standardsDS.html | 4 +- docs/reference/cDS.html | 4 +- docs/reference/cbindDS.html | 4 +- docs/reference/changeRefGroupDS.html | 4 +- docs/reference/checkNegValueDS.html | 4 +- .../checkPermissivePrivacyControlLevel.html | 4 +- docs/reference/classDS.html | 4 +- docs/reference/colnamesDS.html | 4 +- docs/reference/completeCasesDS.html | 4 +- docs/reference/corDS.html | 4 +- docs/reference/corTestDS.html | 4 +- docs/reference/covDS.html | 4 +- docs/reference/dataFrameDS.html | 4 +- docs/reference/dataFrameFillDS.html | 4 +- docs/reference/dataFrameSortDS.html | 4 +- docs/reference/dataFrameSubsetDS1.html | 4 +- docs/reference/dataFrameSubsetDS2.html | 4 +- docs/reference/densityGridDS.html | 4 +- docs/reference/dimDS.html | 4 +- docs/reference/dmtC2SDS.html | 4 +- docs/reference/dsBase-package.html | 4 +- docs/reference/elsplineDS.html | 4 +- docs/reference/extractQuantilesDS1.html | 4 +- docs/reference/extractQuantilesDS2.html | 4 +- docs/reference/gamlssDS.html | 4 +- docs/reference/getWGSRDS.html | 4 +- docs/reference/glmDS1.html | 4 +- docs/reference/glmDS2.html | 4 +- docs/reference/glmPredictDS.ag.html | 4 +- docs/reference/glmPredictDS.as.html | 4 +- docs/reference/glmSLMADS.assign.html | 4 +- docs/reference/glmSLMADS1.html | 4 +- docs/reference/glmSLMADS2.html | 4 +- docs/reference/glmSummaryDS.ag.html | 4 +- docs/reference/glmSummaryDS.as.html | 4 +- docs/reference/glmerSLMADS.assign.html | 4 +- docs/reference/glmerSLMADS2.html | 4 +- docs/reference/heatmapPlotDS.html | 4 +- docs/reference/hetcorDS.html | 4 +- docs/reference/histogramDS1.html | 4 +- docs/reference/histogramDS2.html | 4 +- docs/reference/igb_standardsDS.html | 4 +- docs/reference/index.html | 8 +- docs/reference/isNaDS.html | 4 +- docs/reference/isValidDS.html | 4 +- docs/reference/kurtosisDS1.html | 4 +- docs/reference/kurtosisDS2.html | 4 +- docs/reference/lengthDS.html | 4 +- docs/reference/levelsDS.html | 4 +- docs/reference/lexisDS1.html | 4 +- docs/reference/lexisDS2.html | 4 +- docs/reference/lexisDS3.html | 4 +- docs/reference/listDS.html | 4 +- docs/reference/listDisclosureSettingsDS.html | 4 +- docs/reference/lmerSLMADS.assign.html | 4 +- docs/reference/lmerSLMADS2.html | 4 +- docs/reference/lsDS.html | 4 +- docs/reference/lsplineDS.html | 4 +- docs/reference/matrixDS.html | 4 +- docs/reference/matrixDetDS1.html | 4 +- docs/reference/matrixDetDS2.html | 4 +- docs/reference/matrixDiagDS.html | 4 +- docs/reference/matrixDimnamesDS.html | 4 +- docs/reference/matrixInvertDS.html | 4 +- docs/reference/matrixMultDS.html | 4 +- docs/reference/matrixTransposeDS.html | 4 +- docs/reference/mdPatternDS.html | 127 ++++++++++++++++++ docs/reference/meanDS.html | 4 +- docs/reference/meanSdGpDS.html | 4 +- docs/reference/mergeDS.html | 4 +- docs/reference/messageDS.html | 4 +- docs/reference/metadataDS.html | 4 +- docs/reference/miceDS.html | 4 +- docs/reference/minMaxRandDS.html | 4 +- docs/reference/namesDS.html | 4 +- docs/reference/nsDS.html | 4 +- docs/reference/numNaDS.html | 4 +- docs/reference/qlsplineDS.html | 4 +- docs/reference/quantileMeanDS.html | 4 +- docs/reference/rBinomDS.html | 4 +- docs/reference/rNormDS.html | 4 +- docs/reference/rPoisDS.html | 4 +- docs/reference/rUnifDS.html | 4 +- docs/reference/rangeDS.html | 4 +- docs/reference/ranksSecureDS1.html | 4 +- docs/reference/ranksSecureDS2.html | 4 +- docs/reference/ranksSecureDS3.html | 4 +- docs/reference/ranksSecureDS4.html | 4 +- docs/reference/ranksSecureDS5.html | 4 +- docs/reference/rbindDS.html | 4 +- docs/reference/reShapeDS.html | 4 +- docs/reference/recodeLevelsDS.html | 4 +- docs/reference/recodeValuesDS.html | 4 +- docs/reference/repDS.html | 4 +- docs/reference/replaceNaDS.html | 4 +- docs/reference/rmDS.html | 4 +- docs/reference/rowColCalcDS.html | 4 +- docs/reference/sampleDS.html | 4 +- docs/reference/scatterPlotDS.html | 4 +- docs/reference/seqDS.html | 4 +- docs/reference/setSeedDS.html | 4 +- docs/reference/skewnessDS1.html | 4 +- docs/reference/skewnessDS2.html | 4 +- docs/reference/sqrtDS.html | 4 +- docs/reference/subsetByClassDS.html | 4 +- docs/reference/subsetDS.html | 4 +- docs/reference/table1DDS.html | 4 +- docs/reference/table2DDS.html | 4 +- docs/reference/tableDS.assign.html | 4 +- docs/reference/tableDS.html | 4 +- docs/reference/tableDS2.html | 4 +- docs/reference/tapplyDS.assign.html | 4 +- docs/reference/tapplyDS.html | 4 +- docs/reference/testObjExistsDS.html | 4 +- docs/reference/unListDS.html | 4 +- docs/reference/uniqueDS.html | 4 +- docs/reference/varDS.html | 4 +- docs/reference/vectorDS.html | 4 +- docs/sitemap.xml | 1 + 142 files changed, 414 insertions(+), 282 deletions(-) create mode 100644 docs/reference/mdPatternDS.html diff --git a/docs/404.html b/docs/404.html index bd9ca2cd..828175ea 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -78,7 +78,7 @@

Page not found (404)

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/LICENSE.html b/docs/LICENSE.html index f075675a..5faa2d0e 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -260,7 +260,7 @@

NA

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/authors.html b/docs/authors.html index 0b165dc3..a1aec549 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -102,12 +102,12 @@

Citation

Burton P, Wilson R, Butters O, Ryser-Welch P, Westerberg A, Abarrategui L, Villegas-Diaz R, Avraam D, Marcon Y, Bishop T, Gaye A, Escribà-Montagut X, Wheater S (????). dsBase: 'DataSHIELD' Server Side Base Functions. -R package version 6.3.4. +R package version 6.3.5.9000. 

@Manual{,
   title = {dsBase: 'DataSHIELD' Server Side Base Functions},
   author = {Paul Burton and Rebecca Wilson and Olly Butters and Patricia Ryser-Welch and Alex Westerberg and Leire Abarrategui and Roberto Villegas-Diaz and Demetris Avraam and Yannick Marcon and Tom Bishop and Amadou Gaye and Xavier Escribà-Montagut and Stuart Wheater},
-  note = {R package version 6.3.4},
+  note = {R package version 6.3.5.9000},
 }

Gaye A, Marcon Y, Isaeva J, LaFlamme P, Turner A, Jones E, Minion J, Boyd A, Newby C, Nuotio M, Wilson R, Butters O, Murtagh B, Demir I, Doiron D, Giepmans L, Wallace S, Budin-Ljøsne I, Schmidt C, Boffetta P, Boniol M, Bota M, Carter K, deKlerk N, Dibben C, Francis R, Hiekkalinna T, Hveem K, Kvaløy K, Millar S, Perry I, Peters A, Phillips C, Popham F, Raab G, Reischl E, Sheehan N, Waldenberger M, Perola M, van den Heuvel E, Macleod J, Knoppers B, Stolk R, Fortier I, Harris J, Woffenbuttel B, Murtagh M, Ferretti V, Burton P (2014). “DataSHIELD: taking the analysis to the data, not the data to the analysis.” @@ -168,7 +168,7 @@

Citation

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/index.html b/docs/index.html index 0afa2dfa..1f70741d 100644 --- a/docs/index.html +++ b/docs/index.html @@ -33,7 +33,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -180,7 +180,7 @@

Developers

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 45989012..ad3a64a8 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -1,5 +1,5 @@ pandoc: 3.1.3 -pkgdown: 2.1.3 +pkgdown: 2.2.0 pkgdown_sha: ~ articles: {} -last_built: 2025-09-17T15:04Z +last_built: 2025-11-21T13:10Z diff --git a/docs/reference/BooleDS.html b/docs/reference/BooleDS.html index e99c093a..7cecbed2 100644 --- a/docs/reference/BooleDS.html +++ b/docs/reference/BooleDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -115,7 +115,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

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diff --git a/docs/reference/absDS.html b/docs/reference/absDS.html index cb618048..ca83bf9d 100644 --- a/docs/reference/absDS.html +++ b/docs/reference/absDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -84,7 +84,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

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diff --git a/docs/reference/asCharacterDS.html b/docs/reference/asCharacterDS.html index ad7fee82..8f461038 100644 --- a/docs/reference/asCharacterDS.html +++ b/docs/reference/asCharacterDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -85,7 +85,7 @@

Author

-

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+

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diff --git a/docs/reference/asDataMatrixDS.html b/docs/reference/asDataMatrixDS.html index 043d39ca..2b8fb1d3 100644 --- a/docs/reference/asDataMatrixDS.html +++ b/docs/reference/asDataMatrixDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -92,7 +92,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/asFactorDS1.html b/docs/reference/asFactorDS1.html index 5fc2e8c2..a5463d70 100644 --- a/docs/reference/asFactorDS1.html +++ b/docs/reference/asFactorDS1.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -80,7 +80,7 @@

Details

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/asFactorDS2.html b/docs/reference/asFactorDS2.html index 8fc3ef70..7e1711d3 100644 --- a/docs/reference/asFactorDS2.html +++ b/docs/reference/asFactorDS2.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -102,7 +102,7 @@

Details

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/asFactorSimpleDS.html b/docs/reference/asFactorSimpleDS.html index 999c986c..971a9169 100644 --- a/docs/reference/asFactorSimpleDS.html +++ b/docs/reference/asFactorSimpleDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -85,7 +85,7 @@

Details

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/asIntegerDS.html b/docs/reference/asIntegerDS.html index 77292901..0de6c670 100644 --- a/docs/reference/asIntegerDS.html +++ b/docs/reference/asIntegerDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -86,7 +86,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/asListDS.html b/docs/reference/asListDS.html index 65cdc968..ab9910cc 100644 --- a/docs/reference/asListDS.html +++ b/docs/reference/asListDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -99,7 +99,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/asLogicalDS.html b/docs/reference/asLogicalDS.html index 1f6ab041..689e2461 100644 --- a/docs/reference/asLogicalDS.html +++ b/docs/reference/asLogicalDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -85,7 +85,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/asMatrixDS.html b/docs/reference/asMatrixDS.html index 24e13348..a85c0c7c 100644 --- a/docs/reference/asMatrixDS.html +++ b/docs/reference/asMatrixDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -85,7 +85,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/asNumericDS.html b/docs/reference/asNumericDS.html index 9f8e3871..da79a362 100644 --- a/docs/reference/asNumericDS.html +++ b/docs/reference/asNumericDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -86,7 +86,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/blackBoxDS.html b/docs/reference/blackBoxDS.html index 29be83ec..5d02e3a9 100644 --- a/docs/reference/blackBoxDS.html +++ b/docs/reference/blackBoxDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -134,7 +134,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/blackBoxRanksDS.html b/docs/reference/blackBoxRanksDS.html index a552e899..458737b0 100644 --- a/docs/reference/blackBoxRanksDS.html +++ b/docs/reference/blackBoxRanksDS.html @@ -20,7 +20,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -126,7 +126,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/boxPlotGGDS.html b/docs/reference/boxPlotGGDS.html index be71d316..a0177c41 100644 --- a/docs/reference/boxPlotGGDS.html +++ b/docs/reference/boxPlotGGDS.html @@ -20,7 +20,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -92,7 +92,7 @@

Value

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/boxPlotGG_data_TreatmentDS.html b/docs/reference/boxPlotGG_data_TreatmentDS.html index b7afc848..7acead1e 100644 --- a/docs/reference/boxPlotGG_data_TreatmentDS.html +++ b/docs/reference/boxPlotGG_data_TreatmentDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -88,7 +88,7 @@

Value

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/boxPlotGG_data_Treatment_numericDS.html b/docs/reference/boxPlotGG_data_Treatment_numericDS.html index 7d6902ab..1aa7bd26 100644 --- a/docs/reference/boxPlotGG_data_Treatment_numericDS.html +++ b/docs/reference/boxPlotGG_data_Treatment_numericDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -74,7 +74,7 @@

Value

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/bp_standardsDS.html b/docs/reference/bp_standardsDS.html index 18406769..b7e661c4 100644 --- a/docs/reference/bp_standardsDS.html +++ b/docs/reference/bp_standardsDS.html @@ -20,7 +20,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -116,7 +116,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/cDS.html b/docs/reference/cDS.html index 410b22da..3cc043db 100644 --- a/docs/reference/cDS.html +++ b/docs/reference/cDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -81,7 +81,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/cbindDS.html b/docs/reference/cbindDS.html index c4be7c18..3bed8b0a 100644 --- a/docs/reference/cbindDS.html +++ b/docs/reference/cbindDS.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -100,7 +100,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/changeRefGroupDS.html b/docs/reference/changeRefGroupDS.html index 06ebb201..fbf6ba5f 100644 --- a/docs/reference/changeRefGroupDS.html +++ b/docs/reference/changeRefGroupDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -94,7 +94,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/checkNegValueDS.html b/docs/reference/checkNegValueDS.html index f96f4e41..e9d00fca 100644 --- a/docs/reference/checkNegValueDS.html +++ b/docs/reference/checkNegValueDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -82,7 +82,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/checkPermissivePrivacyControlLevel.html b/docs/reference/checkPermissivePrivacyControlLevel.html index e6efd045..6c19c2b0 100644 --- a/docs/reference/checkPermissivePrivacyControlLevel.html +++ b/docs/reference/checkPermissivePrivacyControlLevel.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -82,7 +82,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/classDS.html b/docs/reference/classDS.html index 71412168..47976968 100644 --- a/docs/reference/classDS.html +++ b/docs/reference/classDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -80,7 +80,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/colnamesDS.html b/docs/reference/colnamesDS.html index e1132722..4282c514 100644 --- a/docs/reference/colnamesDS.html +++ b/docs/reference/colnamesDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -80,7 +80,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/completeCasesDS.html b/docs/reference/completeCasesDS.html index 56845bf1..d84a6ede 100644 --- a/docs/reference/completeCasesDS.html +++ b/docs/reference/completeCasesDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -108,7 +108,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/dataFrameFillDS.html b/docs/reference/dataFrameFillDS.html index 63526a3c..6114470e 100644 --- a/docs/reference/dataFrameFillDS.html +++ b/docs/reference/dataFrameFillDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -106,7 +106,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/dataFrameSortDS.html b/docs/reference/dataFrameSortDS.html index 47246150..d8e8cd13 100644 --- a/docs/reference/dataFrameSortDS.html +++ b/docs/reference/dataFrameSortDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -120,7 +120,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/dataFrameSubsetDS1.html b/docs/reference/dataFrameSubsetDS1.html index cd201b50..98c1bb41 100644 --- a/docs/reference/dataFrameSubsetDS1.html +++ b/docs/reference/dataFrameSubsetDS1.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -146,7 +146,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/dataFrameSubsetDS2.html b/docs/reference/dataFrameSubsetDS2.html index 66dc97f6..91a1413e 100644 --- a/docs/reference/dataFrameSubsetDS2.html +++ b/docs/reference/dataFrameSubsetDS2.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -154,7 +154,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/densityGridDS.html b/docs/reference/densityGridDS.html index 14c4e7b2..b84830f0 100644 --- a/docs/reference/densityGridDS.html +++ b/docs/reference/densityGridDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -120,7 +120,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/dimDS.html b/docs/reference/dimDS.html index ccda6820..36ae7dbf 100644 --- a/docs/reference/dimDS.html +++ b/docs/reference/dimDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -80,7 +80,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/dmtC2SDS.html b/docs/reference/dmtC2SDS.html index df76184d..e5bce26b 100644 --- a/docs/reference/dmtC2SDS.html +++ b/docs/reference/dmtC2SDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -149,7 +149,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/dsBase-package.html b/docs/reference/dsBase-package.html index e6269505..36aa5804 100644 --- a/docs/reference/dsBase-package.html +++ b/docs/reference/dsBase-package.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -73,7 +73,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/elsplineDS.html b/docs/reference/elsplineDS.html index 190483ae..699ad119 100644 --- a/docs/reference/elsplineDS.html +++ b/docs/reference/elsplineDS.html @@ -20,7 +20,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -105,7 +105,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/extractQuantilesDS1.html b/docs/reference/extractQuantilesDS1.html index dd55cbf1..8db3348b 100644 --- a/docs/reference/extractQuantilesDS1.html +++ b/docs/reference/extractQuantilesDS1.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -119,7 +119,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/extractQuantilesDS2.html b/docs/reference/extractQuantilesDS2.html index 94fc91d4..ab0bab81 100644 --- a/docs/reference/extractQuantilesDS2.html +++ b/docs/reference/extractQuantilesDS2.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -117,7 +117,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/gamlssDS.html b/docs/reference/gamlssDS.html index 94fbce79..fc7898fe 100644 --- a/docs/reference/gamlssDS.html +++ b/docs/reference/gamlssDS.html @@ -23,7 +23,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -212,7 +212,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/getWGSRDS.html b/docs/reference/getWGSRDS.html index fb40e162..7ed44dbb 100644 --- a/docs/reference/getWGSRDS.html +++ b/docs/reference/getWGSRDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -140,7 +140,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmDS1.html b/docs/reference/glmDS1.html index 058ae910..ecd2010f 100644 --- a/docs/reference/glmDS1.html +++ b/docs/reference/glmDS1.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -104,7 +104,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmDS2.html b/docs/reference/glmDS2.html index 71ccd910..03731c72 100644 --- a/docs/reference/glmDS2.html +++ b/docs/reference/glmDS2.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -110,7 +110,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmPredictDS.ag.html b/docs/reference/glmPredictDS.ag.html index f99f1f21..8d31da48 100644 --- a/docs/reference/glmPredictDS.ag.html +++ b/docs/reference/glmPredictDS.ag.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -137,7 +137,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmPredictDS.as.html b/docs/reference/glmPredictDS.as.html index 763f05f2..62461b0b 100644 --- a/docs/reference/glmPredictDS.as.html +++ b/docs/reference/glmPredictDS.as.html @@ -20,7 +20,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -136,7 +136,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmSLMADS.assign.html b/docs/reference/glmSLMADS.assign.html index 13ea50d0..7a63760d 100644 --- a/docs/reference/glmSLMADS.assign.html +++ b/docs/reference/glmSLMADS.assign.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -104,7 +104,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmSLMADS1.html b/docs/reference/glmSLMADS1.html index 95fd50ed..a4d8badd 100644 --- a/docs/reference/glmSLMADS1.html +++ b/docs/reference/glmSLMADS1.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -106,7 +106,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmSLMADS2.html b/docs/reference/glmSLMADS2.html index 22858f93..b50e51c9 100644 --- a/docs/reference/glmSLMADS2.html +++ b/docs/reference/glmSLMADS2.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -114,7 +114,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmSummaryDS.ag.html b/docs/reference/glmSummaryDS.ag.html index b8b68d6d..e0f2239e 100644 --- a/docs/reference/glmSummaryDS.ag.html +++ b/docs/reference/glmSummaryDS.ag.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -94,7 +94,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmSummaryDS.as.html b/docs/reference/glmSummaryDS.as.html index a133e4f2..ca99af8e 100644 --- a/docs/reference/glmSummaryDS.as.html +++ b/docs/reference/glmSummaryDS.as.html @@ -20,7 +20,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -93,7 +93,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmerSLMADS.assign.html b/docs/reference/glmerSLMADS.assign.html index 932f8c63..983b845e 100644 --- a/docs/reference/glmerSLMADS.assign.html +++ b/docs/reference/glmerSLMADS.assign.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -148,7 +148,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/glmerSLMADS2.html b/docs/reference/glmerSLMADS2.html index a7672b28..d1c2c9c2 100644 --- a/docs/reference/glmerSLMADS2.html +++ b/docs/reference/glmerSLMADS2.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -156,7 +156,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/heatmapPlotDS.html b/docs/reference/heatmapPlotDS.html index 459a5a98..7c0acfa9 100644 --- a/docs/reference/heatmapPlotDS.html +++ b/docs/reference/heatmapPlotDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -107,7 +107,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/hetcorDS.html b/docs/reference/hetcorDS.html index ac02df16..f080e55c 100644 --- a/docs/reference/hetcorDS.html +++ b/docs/reference/hetcorDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -114,7 +114,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/histogramDS1.html b/docs/reference/histogramDS1.html index dfae6675..3d90be9e 100644 --- a/docs/reference/histogramDS1.html +++ b/docs/reference/histogramDS1.html @@ -23,7 +23,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -105,7 +105,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/histogramDS2.html b/docs/reference/histogramDS2.html index e897cb2a..21f77287 100644 --- a/docs/reference/histogramDS2.html +++ b/docs/reference/histogramDS2.html @@ -21,7 +21,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -117,7 +117,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/igb_standardsDS.html b/docs/reference/igb_standardsDS.html index 357d8b12..56a62b4a 100644 --- a/docs/reference/igb_standardsDS.html +++ b/docs/reference/igb_standardsDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -118,7 +118,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/index.html b/docs/reference/index.html index 59255ef6..ce6e0a97 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -369,6 +369,10 @@

All functions matrixTransposeDS()

matrixTransposeDS serverside assign function called by ds.matrixTranspose

+ +

mdPatternDS()

+ +

Missing data pattern with disclosure control

meanDS()

@@ -586,7 +590,7 @@

All functions
-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/isNaDS.html b/docs/reference/isNaDS.html index 06080e50..60110a6c 100644 --- a/docs/reference/isNaDS.html +++ b/docs/reference/isNaDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -78,7 +78,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/isValidDS.html b/docs/reference/isValidDS.html index 57359377..453aa84d 100644 --- a/docs/reference/isValidDS.html +++ b/docs/reference/isValidDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -80,7 +80,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/kurtosisDS1.html b/docs/reference/kurtosisDS1.html index d65a39fb..6c942ba4 100644 --- a/docs/reference/kurtosisDS1.html +++ b/docs/reference/kurtosisDS1.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -87,7 +87,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/kurtosisDS2.html b/docs/reference/kurtosisDS2.html index 7758f44c..a3be6590 100644 --- a/docs/reference/kurtosisDS2.html +++ b/docs/reference/kurtosisDS2.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -92,7 +92,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/lengthDS.html b/docs/reference/lengthDS.html index 7c14412d..550e337b 100644 --- a/docs/reference/lengthDS.html +++ b/docs/reference/lengthDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -80,7 +80,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/levelsDS.html b/docs/reference/levelsDS.html index 5d7163fb..93bec9bb 100644 --- a/docs/reference/levelsDS.html +++ b/docs/reference/levelsDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -80,7 +80,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/lexisDS1.html b/docs/reference/lexisDS1.html index acf40341..d59e1378 100644 --- a/docs/reference/lexisDS1.html +++ b/docs/reference/lexisDS1.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -81,7 +81,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/lexisDS2.html b/docs/reference/lexisDS2.html index 203d290c..9e1e61a3 100644 --- a/docs/reference/lexisDS2.html +++ b/docs/reference/lexisDS2.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -136,7 +136,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/lexisDS3.html b/docs/reference/lexisDS3.html index c16502f5..97182f3d 100644 --- a/docs/reference/lexisDS3.html +++ b/docs/reference/lexisDS3.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -71,7 +71,7 @@

Details

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/listDS.html b/docs/reference/listDS.html index 517bff8d..8e1f3729 100644 --- a/docs/reference/listDS.html +++ b/docs/reference/listDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -85,7 +85,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/listDisclosureSettingsDS.html b/docs/reference/listDisclosureSettingsDS.html index 2f6252fa..37e561ee 100644 --- a/docs/reference/listDisclosureSettingsDS.html +++ b/docs/reference/listDisclosureSettingsDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -74,7 +74,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/lmerSLMADS.assign.html b/docs/reference/lmerSLMADS.assign.html index 48630bbd..160ae781 100644 --- a/docs/reference/lmerSLMADS.assign.html +++ b/docs/reference/lmerSLMADS.assign.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -129,7 +129,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/lmerSLMADS2.html b/docs/reference/lmerSLMADS2.html index 963b4627..e34c8da9 100644 --- a/docs/reference/lmerSLMADS2.html +++ b/docs/reference/lmerSLMADS2.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -139,7 +139,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/lsDS.html b/docs/reference/lsDS.html index 104bc735..886204b6 100644 --- a/docs/reference/lsDS.html +++ b/docs/reference/lsDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -102,7 +102,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/lsplineDS.html b/docs/reference/lsplineDS.html index 777dd690..bced6894 100644 --- a/docs/reference/lsplineDS.html +++ b/docs/reference/lsplineDS.html @@ -20,7 +20,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -102,7 +102,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/matrixDS.html b/docs/reference/matrixDS.html index 6a64f8b4..c095cf58 100644 --- a/docs/reference/matrixDS.html +++ b/docs/reference/matrixDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -113,7 +113,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/matrixDetDS1.html b/docs/reference/matrixDetDS1.html index 63f81b79..1f6f482a 100644 --- a/docs/reference/matrixDetDS1.html +++ b/docs/reference/matrixDetDS1.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -91,7 +91,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/matrixDetDS2.html b/docs/reference/matrixDetDS2.html index 9792ce23..85e2457e 100644 --- a/docs/reference/matrixDetDS2.html +++ b/docs/reference/matrixDetDS2.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -91,7 +91,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/matrixDiagDS.html b/docs/reference/matrixDiagDS.html index 8b140d6b..8939f343 100644 --- a/docs/reference/matrixDiagDS.html +++ b/docs/reference/matrixDiagDS.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -101,7 +101,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/matrixDimnamesDS.html b/docs/reference/matrixDimnamesDS.html index 3b09658c..bb2d6cfb 100644 --- a/docs/reference/matrixDimnamesDS.html +++ b/docs/reference/matrixDimnamesDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -98,7 +98,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/matrixInvertDS.html b/docs/reference/matrixInvertDS.html index 8c4157ef..31bf8aee 100644 --- a/docs/reference/matrixInvertDS.html +++ b/docs/reference/matrixInvertDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -83,7 +83,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/matrixMultDS.html b/docs/reference/matrixMultDS.html index 8bae8648..4a473555 100644 --- a/docs/reference/matrixMultDS.html +++ b/docs/reference/matrixMultDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -91,7 +91,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/matrixTransposeDS.html b/docs/reference/matrixTransposeDS.html index fc9337f2..2dc8d9a7 100644 --- a/docs/reference/matrixTransposeDS.html +++ b/docs/reference/matrixTransposeDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -84,7 +84,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/mdPatternDS.html b/docs/reference/mdPatternDS.html new file mode 100644 index 00000000..6ed7c777 --- /dev/null +++ b/docs/reference/mdPatternDS.html @@ -0,0 +1,127 @@ + +Missing data pattern with disclosure control — mdPatternDS • dsBase + + +
+
+ + + +
+
+
+

Missing data pattern with disclosure control

+ + +
+ +
+

This function is a serverside aggregate function that computes the +missing data pattern using mice::md.pattern and applies disclosure control to +prevent revealing small cell counts.

+
+ +
+ 
mdPatternDS(x)
+
+ +
+

Arguments

+ + +
x
+

a character string specifying the name of a data frame or matrix +containing the data to analyze for missing patterns.

+ +
+
+

Value

+

A list containing:

+
pattern
+

The missing data pattern matrix with disclosure control applied

+ +
valid
+

Logical indicating if all patterns meet disclosure requirements

+ +
message
+

A message describing the validity status

+ +
+
+

Details

+

This function calls the mice::md.pattern function to generate a matrix +showing the missing data patterns in the input data. To ensure disclosure control, +any pattern counts that are below the threshold (nfilter.tab, default=3) are +suppressed.

+

Suppression Method:

+

When a pattern count is below threshold: +- Row name is changed to "suppressed(<N>)" where N is the threshold +- All pattern values in that row are set to NA +- Summary row is also set to NA (prevents back-calculation)

+

Output Matrix Structure:

+

- Rows represent different missing data patterns (plus a summary row at the bottom) +- Row names contain pattern counts (or "suppressed(<N>)" for invalid patterns) +- Columns show 1 if variable is observed, 0 if missing +- Last column shows total number of missing values per pattern +- Last row shows total number of missing values per variable

+

Note for Pooling:

+

When this function is called from ds.mdPattern with type='combine', suppressed +patterns are excluded from pooling to prevent disclosure through subtraction. +This means pooled counts may underestimate the true total when patterns are +suppressed in some studies.

+
+
+

Author

+

Xavier Escribà montagut for DataSHIELD Development Team

+
+ +
+ +
+ + +
+

Developed by Paul Burton, Rebecca Wilson, Olly Butters, Patricia Ryser-Welch, Alex Westerberg, Leire Abarrategui, Roberto Villegas-Diaz, Demetris Avraam, Yannick Marcon, Tom Bishop, Amadou Gaye, Xavier Escribà-Montagut, Stuart Wheater.

+
+ +
+

Site built with pkgdown 2.2.0.

+
+ +
+ + + + + + + + diff --git a/docs/reference/meanDS.html b/docs/reference/meanDS.html index e8946d90..7806e4e4 100644 --- a/docs/reference/meanDS.html +++ b/docs/reference/meanDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -81,7 +81,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/nsDS.html b/docs/reference/nsDS.html index 03822097..7d74fa0b 100644 --- a/docs/reference/nsDS.html +++ b/docs/reference/nsDS.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -114,7 +114,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/qlsplineDS.html b/docs/reference/qlsplineDS.html index 231fcb89..5db49162 100644 --- a/docs/reference/qlsplineDS.html +++ b/docs/reference/qlsplineDS.html @@ -20,7 +20,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -113,7 +113,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/rBinomDS.html b/docs/reference/rBinomDS.html index 1e494c8c..fe27c36a 100644 --- a/docs/reference/rBinomDS.html +++ b/docs/reference/rBinomDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -106,7 +106,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/rUnifDS.html b/docs/reference/rUnifDS.html index 7af321e6..5fdd2c11 100644 --- a/docs/reference/rUnifDS.html +++ b/docs/reference/rUnifDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -114,7 +114,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/ranksSecureDS3.html b/docs/reference/ranksSecureDS3.html index ddc7e933..3d5df277 100644 --- a/docs/reference/ranksSecureDS3.html +++ b/docs/reference/ranksSecureDS3.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -100,7 +100,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/ranksSecureDS4.html b/docs/reference/ranksSecureDS4.html index c5db0477..ae6ef70a 100644 --- a/docs/reference/ranksSecureDS4.html +++ b/docs/reference/ranksSecureDS4.html @@ -20,7 +20,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -115,7 +115,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/ranksSecureDS5.html b/docs/reference/ranksSecureDS5.html index bb98ac56..1b6788c3 100644 --- a/docs/reference/ranksSecureDS5.html +++ b/docs/reference/ranksSecureDS5.html @@ -20,7 +20,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -115,7 +115,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/reShapeDS.html b/docs/reference/reShapeDS.html index 0b5ebc94..3efbac3d 100644 --- a/docs/reference/reShapeDS.html +++ b/docs/reference/reShapeDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -146,7 +146,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/recodeLevelsDS.html b/docs/reference/recodeLevelsDS.html index a7279d5c..a2d5b275 100644 --- a/docs/reference/recodeLevelsDS.html +++ b/docs/reference/recodeLevelsDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -82,7 +82,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/recodeValuesDS.html b/docs/reference/recodeValuesDS.html index d58ae97e..da0679e3 100644 --- a/docs/reference/recodeValuesDS.html +++ b/docs/reference/recodeValuesDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -116,7 +116,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/repDS.html b/docs/reference/repDS.html index 1299f1e9..d7a1fb03 100644 --- a/docs/reference/repDS.html +++ b/docs/reference/repDS.html @@ -21,7 +21,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -196,7 +196,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/replaceNaDS.html b/docs/reference/replaceNaDS.html index 17b516b6..60d2bb00 100644 --- a/docs/reference/replaceNaDS.html +++ b/docs/reference/replaceNaDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -92,7 +92,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/rmDS.html b/docs/reference/rmDS.html index 190067c5..0e722d5b 100644 --- a/docs/reference/rmDS.html +++ b/docs/reference/rmDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -94,7 +94,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/rowColCalcDS.html b/docs/reference/rowColCalcDS.html index 2e657383..d5acc41a 100644 --- a/docs/reference/rowColCalcDS.html +++ b/docs/reference/rowColCalcDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -88,7 +88,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/sampleDS.html b/docs/reference/sampleDS.html index add11002..9e63a62b 100644 --- a/docs/reference/sampleDS.html +++ b/docs/reference/sampleDS.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -122,7 +122,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

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Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/seqDS.html b/docs/reference/seqDS.html index 34a78997..5436c17f 100644 --- a/docs/reference/seqDS.html +++ b/docs/reference/seqDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -139,7 +139,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/setSeedDS.html b/docs/reference/setSeedDS.html index 4e49ec86..3f93d5d5 100644 --- a/docs/reference/setSeedDS.html +++ b/docs/reference/setSeedDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -114,7 +114,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/skewnessDS1.html b/docs/reference/skewnessDS1.html index e5e3fb6b..7fcff17c 100644 --- a/docs/reference/skewnessDS1.html +++ b/docs/reference/skewnessDS1.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -87,7 +87,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/skewnessDS2.html b/docs/reference/skewnessDS2.html index f86c7490..96ca37f2 100644 --- a/docs/reference/skewnessDS2.html +++ b/docs/reference/skewnessDS2.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -92,7 +92,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/sqrtDS.html b/docs/reference/sqrtDS.html index e4685e8c..7b232fd0 100644 --- a/docs/reference/sqrtDS.html +++ b/docs/reference/sqrtDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -84,7 +84,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/subsetByClassDS.html b/docs/reference/subsetByClassDS.html index 92b0197c..fc546a46 100644 --- a/docs/reference/subsetByClassDS.html +++ b/docs/reference/subsetByClassDS.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -93,7 +93,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/subsetDS.html b/docs/reference/subsetDS.html index 9a8aa624..82f92ba4 100644 --- a/docs/reference/subsetDS.html +++ b/docs/reference/subsetDS.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -128,7 +128,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/table1DDS.html b/docs/reference/table1DDS.html index 3df80b76..574f90e4 100644 --- a/docs/reference/table1DDS.html +++ b/docs/reference/table1DDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -87,7 +87,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/table2DDS.html b/docs/reference/table2DDS.html index 46cc9336..b120d9ab 100644 --- a/docs/reference/table2DDS.html +++ b/docs/reference/table2DDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -91,7 +91,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/tableDS.assign.html b/docs/reference/tableDS.assign.html index 60498ea1..5c5ea7d7 100644 --- a/docs/reference/tableDS.assign.html +++ b/docs/reference/tableDS.assign.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -139,7 +139,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/tableDS.html b/docs/reference/tableDS.html index ad0ace8f..96b9b031 100644 --- a/docs/reference/tableDS.html +++ b/docs/reference/tableDS.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -143,7 +143,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/tableDS2.html b/docs/reference/tableDS2.html index 05b130b5..360bd692 100644 --- a/docs/reference/tableDS2.html +++ b/docs/reference/tableDS2.html @@ -18,7 +18,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -113,7 +113,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/tapplyDS.assign.html b/docs/reference/tapplyDS.assign.html index 8ebff9e1..325a9d7c 100644 --- a/docs/reference/tapplyDS.assign.html +++ b/docs/reference/tapplyDS.assign.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -97,7 +97,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/tapplyDS.html b/docs/reference/tapplyDS.html index 36a9d184..ba1dec6d 100644 --- a/docs/reference/tapplyDS.html +++ b/docs/reference/tapplyDS.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -97,7 +97,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/testObjExistsDS.html b/docs/reference/testObjExistsDS.html index 489f9f7c..d8baf8bd 100644 --- a/docs/reference/testObjExistsDS.html +++ b/docs/reference/testObjExistsDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -84,7 +84,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/unListDS.html b/docs/reference/unListDS.html index d7b8aaf4..c59d955e 100644 --- a/docs/reference/unListDS.html +++ b/docs/reference/unListDS.html @@ -19,7 +19,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -108,7 +108,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/uniqueDS.html b/docs/reference/uniqueDS.html index a25aeaca..c65fdb87 100644 --- a/docs/reference/uniqueDS.html +++ b/docs/reference/uniqueDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -81,7 +81,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/varDS.html b/docs/reference/varDS.html index 37a4d212..f4a05a39 100644 --- a/docs/reference/varDS.html +++ b/docs/reference/varDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -84,7 +84,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/reference/vectorDS.html b/docs/reference/vectorDS.html index c7cca023..36faaa54 100644 --- a/docs/reference/vectorDS.html +++ b/docs/reference/vectorDS.html @@ -17,7 +17,7 @@ dsBase - 6.3.4 + 6.3.5.9000 @@ -81,7 +81,7 @@

Author

-

Site built with pkgdown 2.1.3.

+

Site built with pkgdown 2.2.0.

diff --git a/docs/sitemap.xml b/docs/sitemap.xml index 04ef332c..0d5e1008 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -89,6 +89,7 @@ /reference/matrixInvertDS.html /reference/matrixMultDS.html /reference/matrixTransposeDS.html +/reference/mdPatternDS.html /reference/meanDS.html /reference/meanSdGpDS.html /reference/mergeDS.html From 81f5f64c69a99ef88f7e5bf25a3ca92f9e5a536d Mon Sep 17 00:00:00 2001 From: Roberto Villegas-Diaz Date: Wed, 26 Nov 2025 18:40:32 +0000 Subject: [PATCH 3/6] Remove nightly scheduled run and update call to parse_test_report.R --- .github/workflows/dsBase_test_suite.yaml | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/.github/workflows/dsBase_test_suite.yaml b/.github/workflows/dsBase_test_suite.yaml index 8f03b10f..2cbe5ff3 100755 --- a/.github/workflows/dsBase_test_suite.yaml +++ b/.github/workflows/dsBase_test_suite.yaml @@ -15,7 +15,6 @@ on: push: schedule: - cron: '0 0 * * 0' # Weekly - - cron: '0 1 * * *' # Nightly jobs: dsBase_test_suite: @@ -157,8 +156,11 @@ jobs: - name: Parse results from testthat and covr run: | - Rscript --verbose --vanilla ../testStatus/source/parse_test_report.R logs/ + Rscript --verbose --vanilla ../testStatus/source/parse_test_report.R logs/ logs/ https://github.com/datashield/${{ env.PROJECT_NAME }}/blob/${{ env.BRANCH_NAME }} '[^-:.]+' '(?<=::)[^:]+(?=::)' working-directory: dsBase + env: + PROJECT_NAME: ${{ env.PROJECT_NAME }} + BRANCH_NAME: ${{ env.BRANCH_NAME }} - name: Render report run: | From e0d234fe71bb61894984e6abf142ebe7e41a3151 Mon Sep 17 00:00:00 2001 From: Roberto Villegas-Diaz Date: Wed, 26 Nov 2025 19:05:10 +0000 Subject: [PATCH 4/6] Add session_info_*.txt as one of the log outputs and avoid storing duplicated HTML reports --- .github/workflows/dsBase_test_suite.yaml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/.github/workflows/dsBase_test_suite.yaml b/.github/workflows/dsBase_test_suite.yaml index 2cbe5ff3..bea80e31 100755 --- a/.github/workflows/dsBase_test_suite.yaml +++ b/.github/workflows/dsBase_test_suite.yaml @@ -152,6 +152,7 @@ jobs: echo "branch:${{ env.BRANCH_NAME }}" > ${{ env.WORKFLOW_ID }}.txt echo "os:$(lsb_release -ds)" >> ${{ env.WORKFLOW_ID }}.txt echo "R:$(R --version | head -n1)" >> ${{ env.WORKFLOW_ID }}.txt + Rscript --vanilla -e 'sessionInfo()' >> session_info_${{ env.WORKFLOW_ID }}.txt working-directory: dsBase/logs - name: Parse results from testthat and covr @@ -167,7 +168,6 @@ jobs: cd testStatus mkdir -p new/logs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/ - mkdir -p new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/ mkdir -p new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/latest/ # Copy logs to new logs directory location @@ -175,8 +175,7 @@ jobs: cp -rv ../${{ env.PROJECT_NAME }}/logs/${{ env.WORKFLOW_ID }}.txt new/logs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/ R -e 'input_dir <- file.path("../new/logs", Sys.getenv("PROJECT_NAME"), Sys.getenv("BRANCH_NAME"), Sys.getenv("WORKFLOW_ID")); quarto::quarto_render("source/test_report.qmd", execute_params = list(input_dir = input_dir))' - mv source/test_report.html new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/index.html - cp -r new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/${{ env.WORKFLOW_ID }}/* new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/latest + mv source/test_report.html new/docs/${{ env.PROJECT_NAME }}/${{ env.BRANCH_NAME }}/latest/index.html env: PROJECT_NAME: ${{ env.PROJECT_NAME }} From 42efdb6f852356525667798af41d3ab90ae61b87 Mon Sep 17 00:00:00 2001 From: Stuart Wheater Date: Sun, 30 Nov 2025 14:53:56 +0000 Subject: [PATCH 5/6] Update 'perf' support --- tests/testthat/perf_tests/perf_rate.R | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/tests/testthat/perf_tests/perf_rate.R b/tests/testthat/perf_tests/perf_rate.R index 1884cda8..64b638db 100644 --- a/tests/testthat/perf_tests/perf_rate.R +++ b/tests/testthat/perf_tests/perf_rate.R @@ -1,5 +1,5 @@ #------------------------------------------------------------------------------- -# Copyright (c) 2024 Arjuna Technologies, Newcastle upon Tyne. All rights reserved. +# Copyright (c) 2024-2025 Arjuna Technologies, Newcastle upon Tyne. All rights reserved. # # This program and the accompanying materials # are made available under the terms of the GNU Public License v3.0. @@ -8,7 +8,8 @@ # along with this program. If not, see . #------------------------------------------------------------------------------- -.perf.reference.filename <- 'perf_files/default_perf_profile.csv' +.perf.reference.filename <- 'perf_files/default_perf_profile.csv' +.perf.reference.save.filename <- NULL .perf.reference <- NULL @@ -22,7 +23,13 @@ perf.reference.save <- function(perf.ref.name, rate, tolerance.lower, tolerance. .perf.reference[nrow(.perf.reference)+1,] <- c(perf.ref.name, rate, tolerance.lower, tolerance.upper) - write.csv(.perf.reference, .perf.reference.filename, row.names = FALSE) + if (is.null(.perf.reference.save.filename)) + { + .perf.reference.save.filename <<- base::tempfile(pattern = "perf_file_", fileext = ".csv") + message(paste0("Additional perf record added to '", .perf.reference.save.filename, "'")) + } + + write.csv(.perf.reference, .perf.reference.save.filename, row.names = FALSE) .perf.reference <<- .perf.reference } @@ -47,4 +54,3 @@ perf.reference.tolerance.upper <- function(perf.ref.name) { return(as.numeric(.perf.reference[which(.perf.reference$refer_name == perf.ref.name),]$upper_tolerance)) } - From 998482cac34d0d4af778c4d320d5244ca9cc58a8 Mon Sep 17 00:00:00 2001 From: Stuart Wheater Date: Sun, 30 Nov 2025 17:15:04 +0000 Subject: [PATCH 6/6] Minor docs update --- docs/pkgdown.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index ad3a64a8..c3eb19af 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -2,4 +2,4 @@ pandoc: 3.1.3 pkgdown: 2.2.0 pkgdown_sha: ~ articles: {} -last_built: 2025-11-21T13:10Z +last_built: 2025-11-30T16:44Z