diff --git a/modules/subworkflows/liftover.nf b/modules/subworkflows/liftover.nf index 2853341..ffaea9f 100644 --- a/modules/subworkflows/liftover.nf +++ b/modules/subworkflows/liftover.nf @@ -8,7 +8,7 @@ workflow LIFTOVER { ch_annot ch_tgt main: - if (params.annotation != 'bed'){ + if (params.annotation_format != 'bed'){ log.info "Using CrossMap" lifted = crossmap(chain, ch_annot, ch_tgt) } else { @@ -22,4 +22,4 @@ workflow LIFTOVER { features_stats( ch_annot, lifted.lifted_ch ) emit: features_stats.out -} \ No newline at end of file +}