Fix precommits (#741)

* Cleanup Vivado .h files

* Cleanup Quartus .h files

* pre-commit for pytests

* precommit to hls4ml script

* Cleanup Vitis .h files

* precommit for other tests

* pycommit for pyproject.toml

* pre-commits for writer

* pre-commits for utils

* pre-commits for templates

* fix scrits, quartus_report

* pre-commit for model

* pre-commit for converters

* pre-commit for backens

* pre-commit for __init__.py

* pre-commit for contrib

* precommit for global files

* isort: skip vitis

* update

* run pre-commit on all files

* graft contrib

* update

* dependabot

* ci

* Fix some tests related to Vitis changes

* Use accum_t for pool window in Vitis backend

* Add more tolerance to RNN tests

---------

Co-authored-by: Vladimir Loncar <vloncar@users.noreply.github.com>
Co-authored-by: Javier Duarte <jduarte@ucsd.edu>

Author: 3 people

.github/workflows/dependabot.yml

@@ -0,0 +1,7 @@
+version: 2
+updates:
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"

.github/workflows/pre-commit.yml

@@ -20,18 +20,7 @@ jobs:
         with:
           submodules: recursive
 
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
-        with:
-          python-version: ${{ matrix.python-version }}
-
-      - id: file_changes
-        uses: trilom/file-changes-action@v1.2.4
-        with:
-          prNumber: ${{ github.event.number }}
-          output: ' '
-
       - name: Pre-commit
         uses: pre-commit/action@v3.0.0
         with:
-          extra_args: --files ${{ steps.file_changes.outputs.files }}
+          extra_args: --hook-stage manual --all-files

.github/workflows/pypi-publish.yml

@@ -10,6 +10,8 @@ jobs:
     steps:
     - name: Checkout source
       uses: actions/checkout@v3
+      with:
+        submodules: recursive
     - uses: actions/setup-python@v2
       with:
         python-version: '3.x' # Version range or exact version of a Python version to use, using SemVer's version range syntax

.github/workflows/update-branch-on-pr.yml

@@ -17,4 +17,4 @@ jobs:
       if: ${{ github.event.pull_request.head.repo.full_name != github.event.pull_request.base.repo.full_name && github.event.label.name == 'please test' }}
       run: |
         git checkout -b pr/${{ github.event.pull_request.number }}
-        git push --force origin pr/${{ github.event.pull_request.number }}
+        git push --force origin pr/${{ github.event.pull_request.number }}

.gitignore

@@ -12,4 +12,4 @@ my-hls-test
 docs/_build
 docs/autodoc/*
 hls4mlprj_*
-*~
+*~

.gitlab-ci.yml

@@ -6,11 +6,11 @@ stages:
 generator:
   stage: generate
   image: python:3.7-alpine
-  tags: 
+  tags:
     - docker
   before_script:
     - pip install pyyaml
-  script: 
+  script:
     - cd test/pytest
     - python generate_ci_yaml.py
   artifacts:

.pre-commit-config.yaml

@@ -60,3 +60,11 @@ repos:
   hooks:
     - id: p-clang-format
       types_or: [c++, c, cuda]
+ci:
+    autofix_commit_msg: '[pre-commit.ci] auto fixes from pre-commit hooks'
+    autofix_prs: false  # default is true
+    autoupdate_branch: 'main'
+    autoupdate_commit_msg: '[pre-commit.ci] pre-commit autoupdate'
+    autoupdate_schedule: weekly
+    skip: []
+    submodules: true

CITATION.cff

@@ -18,6 +18,6 @@ keywords:
   - qonnx
 license: "Apache-2.0"
 abstract: |
-  hls4ml is an open-source software-hardware codesign workflow 
-  to interpret and translate machine learning algorithms for 
+  hls4ml is an open-source software-hardware codesign workflow
+  to interpret and translate machine learning algorithms for
   implementations in hardware, including FPGAs and ASICs.

MANIFEST.in

@@ -1,6 +1,7 @@
 include LICENSE README.md CONTRIBUTING.md CITATION.cff pyproject.toml setup.py setup.cfg .clang-format
 graft example-models
 graft test
+graft contrib
 recursive-include hls4ml/templates *
 global-exclude .git .gitmodules .gitlab-ci.yml
 include hls4ml/backends/vivado_accelerator/supported_boards.json