Hello support,
I am attempting to use the Michigan Imputation Docker server from an isolated EC2 instance and I am running into some issues. Note I have been following the steps here: https://github.com/genepi/imputationserver-docker and I started the server with this command:
$ sudo docker run -d -p 8080:80 -v /mnt/data/tools/michigan_imputation_server:/data/ genepi/imputationserver:v1.4.1
The first issue I am having is when I follow the instructions to add the 1000 Genome reference, the Admin Applications tab is blank. Is this an issue with running in an isolated environment? Or do I need to put the reference in a location that the docker application can see the reference?
The second issue I had while trying to execute with the already available HapMap reference. The job seemed to die after a few hours but with no outputs (no logs) and only created the job folder containing the input file thus I'm guessing the program did not have enough resources to execute properly. Would you be able to point me to a resources requirements description or file? I tried running on a t2.xlarge (4CPUs with 16GBs of ram). I would really appreciate it if you are able to provide a recommended AWS instance type or the resource requirements.
Hello support,
I am attempting to use the Michigan Imputation Docker server from an isolated EC2 instance and I am running into some issues. Note I have been following the steps here: https://github.com/genepi/imputationserver-docker and I started the server with this command:
$ sudo docker run -d -p 8080:80 -v /mnt/data/tools/michigan_imputation_server:/data/ genepi/imputationserver:v1.4.1
The first issue I am having is when I follow the instructions to add the 1000 Genome reference, the Admin Applications tab is blank. Is this an issue with running in an isolated environment? Or do I need to put the reference in a location that the docker application can see the reference?
The second issue I had while trying to execute with the already available HapMap reference. The job seemed to die after a few hours but with no outputs (no logs) and only created the job folder containing the input file thus I'm guessing the program did not have enough resources to execute properly. Would you be able to point me to a resources requirements description or file? I tried running on a t2.xlarge (4CPUs with 16GBs of ram). I would really appreciate it if you are able to provide a recommended AWS instance type or the resource requirements.