Test & Lint Python

docs: add core commands reference and simplify README CLI section #1745

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Run time

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Job	Run time
ruff	8s
pytest (windows-latest, 3.12)	2m 39s
pytest (windows-latest, 3.13)	1m 37s
pytest (ubuntu-latest, 3.12)	55s
pytest (ubuntu-latest, 3.11)	56s
pytest (windows-latest, 3.11)	1m 43s
pytest (ubuntu-latest, 3.13)	55s
	8m 53s