remove: completely eliminate all MCP/Jira integration components

- Delete all MCP configuration files (.mcp/, mcp.json, .mcp.yaml)
- Remove MCP setup from devcontainer setup.sh
- Remove setupAtlassianMCP task from automations.yaml
- Clean slate - no more MCP/Jira dependencies or build issues

Co-authored-by: Ona <no-reply@ona.com>

Author: jrcoak

.devcontainer/setup.sh

@@ -34,32 +34,4 @@ echo "🔧 Available commands:"
 echo "   ./startup.sh      - Start all services"
 echo "   ./health-check.sh - Check service health"
 
-# Setup Official Atlassian MCP server
-echo "🚀 Setting up Official Atlassian MCP server..."
-
-# Create config directory
-mkdir -p ~/.config/gitpod
-
-# Create MCP configuration file for Official Atlassian MCP
-echo "⚙️ Creating Official Atlassian MCP configuration..."
-cat > ~/.config/gitpod/mcp-config.json << EOF
-{
-  "mcpServers": {
-    "atlassian-mcp": {
-      "command": "npx",
-      "args": [
-        "-y",
-        "mcp-remote",
-        "https://mcp.atlassian.com/v1/sse"
-      ],
-      "env": {}
-    }
-  }
-}
-EOF
-
-echo "✅ Official Atlassian MCP server setup complete!"
-echo "📍 Configuration: ~/.config/gitpod/mcp-config.json"
-echo "📍 Server endpoint: https://mcp.atlassian.com/v1/sse"
-echo "🔐 Authentication: OAuth 2.1 flow will be triggered when connecting"
-echo "🎯 Supports: Jira, Compass, and Confluence"
+echo "✅ Setup completed successfully!"

.gitpod/automations.yaml

@@ -175,85 +175,6 @@ services:
         pkill -f "vite" || true
 
 tasks:
-  setupAtlassianMCP:
-    name: "Setup Official Atlassian MCP"
-    description: "Configure Official Atlassian MCP server for Jira, Compass, and Confluence integration"
-    triggeredBy:
-      - manual
-      - postEnvironmentStart
-    command: |
-      echo "Setting up Official Atlassian MCP server..."
-
-      # Create config directory
-      mkdir -p ~/.config/gitpod
-      
-      # Create MCP configuration file for Official Atlassian MCP
-      echo "Creating Official Atlassian MCP configuration..."
-      cat > ~/.config/gitpod/mcp-config.json << EOF
-      {
-        "mcpServers": {
-          "atlassian-mcp": {
-            "command": "npx",
-            "args": [
-              "-y",
-              "mcp-remote",
-              "https://mcp.atlassian.com/v1/sse"
-            ],
-            "env": {}
-          }
-        }
-      }
-      EOF
-      
-      # Configure generic MCP client connection
-      echo "Configuring MCP client connection..."
-      
-      # Create generic MCP client config
-      MCP_CLIENT_CONFIG="$HOME/.config/mcp/client-config.json"
-      mkdir -p "$HOME/.config/mcp"
-      cat > "$MCP_CLIENT_CONFIG" << EOF
-      {
-        "mcpServers": {
-          "atlassian-mcp": {
-            "command": "npx",
-            "args": [
-              "-y",
-              "mcp-remote",
-              "https://mcp.atlassian.com/v1/sse"
-            ],
-            "env": {}
-          }
-        }
-      }
-      EOF
-
-      # Test mcp-remote availability
-      echo "Testing mcp-remote availability..."
-      if npx -y mcp-remote --version >/dev/null 2>&1; then
-        echo "mcp-remote is available"
-      else
-        echo "mcp-remote installation may be needed on first use"
-      fi
-      
-      # Create a simple verification script
-      echo '#!/bin/bash' > /tmp/verify-mcp-connection.sh
-      echo 'echo "Verifying Official Atlassian MCP configuration..."' >> /tmp/verify-mcp-connection.sh
-      echo 'echo "Server config: $([ -f ~/.config/gitpod/mcp-config.json ] && echo \"Found\" || echo \"Missing\")"' >> /tmp/verify-mcp-connection.sh
-      echo 'echo "Generic client config: $([ -f ~/.config/mcp/client-config.json ] && echo \"Found\" || echo \"Missing\")"' >> /tmp/verify-mcp-connection.sh
-      echo 'echo "mcp-remote available: $(npx -y mcp-remote --version >/dev/null 2>&1 && echo \"Yes\" || echo \"No\")"' >> /tmp/verify-mcp-connection.sh
-      chmod +x /tmp/verify-mcp-connection.sh
-
-      echo "Official Atlassian MCP server setup complete"
-      echo "Server config: ~/.config/gitpod/mcp-config.json"
-      echo "Generic client config: ~/.config/mcp/client-config.json"
-      echo "Server endpoint: https://mcp.atlassian.com/v1/sse"
-      echo "Authentication: OAuth 2.1 flow (browser-based)"
-      echo "Supported services: Jira, Compass, and Confluence"
-      echo "Available tools: Dynamic based on user permissions"
-      echo ""
-      echo "Run '/tmp/verify-mcp-connection.sh' to verify the setup"
-      echo "When connecting, you'll be prompted to authenticate via browser"
-      echo "AI assistants may need to restart to pick up the new MCP configuration"
 
   seedDatabase:
     name: "Seed Database"