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fix: update automations.yaml and correct MCP configuration
- Remove problematic jira-mcp service from automations.yaml - Replace setupJiraMCP task with setupAtlassianMCP task - Fix MCP configuration to use mcp-remote proxy instead of server-fetch - Update all MCP config files to use correct npx mcp-remote command - Remove dependency on third-party jira-mcp repository entirely This completes the migration to the official Atlassian MCP server with proper OAuth 2.1 authentication and eliminates all build issues. Co-authored-by: Ona <no-reply@ona.com>
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-120
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‎.devcontainer/setup.sh‎

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -48,7 +48,8 @@ cat > ~/.config/gitpod/mcp-config.json << EOF
4848
"atlassian-mcp": {
4949
"command": "npx",
5050
"args": [
51-
"@modelcontextprotocol/server-fetch",
51+
"-y",
52+
"mcp-remote",
5253
"https://mcp.atlassian.com/v1/sse"
5354
],
5455
"env": {}

‎.gitpod/automations.yaml‎

Lines changed: 36 additions & 117 deletions
Original file line numberDiff line numberDiff line change
@@ -1,58 +1,4 @@
11
services:
2-
jira-mcp:
3-
name: "Jira MCP Server"
4-
description: "Model Context Protocol server for Jira integration"
5-
triggeredBy:
6-
- postDevcontainerStart
7-
- postEnvironmentStart
8-
commands:
9-
start: |
10-
echo "Setting up Jira MCP server..."
11-
12-
# Clone and build Jira MCP if not already present
13-
if [ ! -d "/home/node/jira-mcp" ]; then
14-
echo "Cloning Jira MCP repository..."
15-
cd /home/node
16-
git clone https://github.com/MankowskiNick/jira-mcp.git
17-
cd jira-mcp
18-
echo "Installing dependencies..."
19-
npm install
20-
echo "Building project..."
21-
npm run build
22-
else
23-
echo "Jira MCP already installed"
24-
fi
25-
26-
# Test MCP server connection if credentials are available
27-
if [ -n "\$JIRA_API_TOKEN" ] && [ "\$JIRA_API_TOKEN" != "your_api_token_here" ]; then
28-
echo "Testing MCP server connection..."
29-
cd /home/node/jira-mcp
30-
31-
# Test server initialization
32-
if echo '{"jsonrpc": "2.0", "id": 1, "method": "initialize", "params": {"protocolVersion": "2024-11-05", "capabilities": {"roots": {"listChanged": true}}, "clientInfo": {"name": "test-client", "version": "1.0.0"}}}' | timeout 10 node build/index.js >/dev/null 2>&1; then
33-
echo "MCP server connection test successful"
34-
else
35-
echo "MCP server connection test failed - check credentials"
36-
fi
37-
fi
38-
39-
echo "Jira MCP server setup complete"
40-
echo "Server location: /home/node/jira-mcp/"
41-
echo "Configuration: Uses standardized MCP config files (.mcp/config.json, mcp.json, .mcp.yaml)"
42-
echo "Project: MBA (coakley.atlassian.net)"
43-
echo "Available tools: create-ticket, get-ticket, search-tickets, update-ticket, link-tickets, get-test-steps, add-test-steps"
44-
45-
ready: |
46-
if [ -f "/home/node/jira-mcp/build/index.js" ]; then
47-
echo "Jira MCP server is ready"
48-
exit 0
49-
else
50-
echo "Jira MCP server not ready"
51-
exit 1
52-
fi
53-
54-
stop: |
55-
echo "Jira MCP server stopped (no persistent process)"
562

573
postgres:
584
name: "PostgreSQL Database"
@@ -230,50 +176,31 @@ services:
230176
pkill -f "vite" || true
231177
232178
tasks:
233-
setupJiraMCP:
234-
name: "Setup Jira MCP"
235-
description: "Install and configure Jira MCP server for AI integration"
179+
setupAtlassianMCP:
180+
name: "Setup Official Atlassian MCP"
181+
description: "Configure Official Atlassian MCP server for Jira, Compass, and Confluence integration"
236182
triggeredBy:
237183
- manual
238184
- postEnvironmentStart
239185
command: |
240-
echo "Setting up Jira MCP server..."
186+
echo "Setting up Official Atlassian MCP server..."
241187
242188
# Create config directory
243189
mkdir -p ~/.config/gitpod
244190
245-
# Clone and build Jira MCP if not already present
246-
if [ ! -d "/home/node/jira-mcp" ]; then
247-
echo "Cloning Jira MCP repository..."
248-
cd /home/node
249-
git clone https://github.com/MankowskiNick/jira-mcp.git
250-
cd jira-mcp
251-
echo "Installing dependencies..."
252-
npm install
253-
echo "Building project..."
254-
npm run build
255-
else
256-
echo "Jira MCP already installed"
257-
fi
258-
259-
# Create MCP configuration file
260-
echo "Creating MCP configuration..."
191+
# Create MCP configuration file for Official Atlassian MCP
192+
echo "Creating Official Atlassian MCP configuration..."
261193
cat > ~/.config/gitpod/mcp-config.json << EOF
262194
{
263195
"mcpServers": {
264-
"jira-mcp": {
265-
"command": "node",
266-
"args": ["/home/node/jira-mcp/build/index.js"],
267-
"env": {
268-
"JIRA_HOST": "\${JIRA_HOST:-coakley.atlassian.net}",
269-
"JIRA_USERNAME": "\${JIRA_USERNAME:-joe@gitpod.io}",
270-
"JIRA_API_TOKEN": "\${JIRA_API_TOKEN:-your_api_token_here}",
271-
"JIRA_PROJECT_KEY": "\${JIRA_PROJECT_KEY:-MBA}",
272-
"AUTO_CREATE_TEST_TICKETS": "true",
273-
"JIRA_ACCEPTANCE_CRITERIA_FIELD": "customfield_10429",
274-
"JIRA_STORY_POINTS_FIELD": "customfield_10040",
275-
"JIRA_EPIC_LINK_FIELD": "customfield_10014"
276-
}
196+
"atlassian-mcp": {
197+
"command": "npx",
198+
"args": [
199+
"-y",
200+
"mcp-remote",
201+
"https://mcp.atlassian.com/v1/sse"
202+
],
203+
"env": {}
277204
}
278205
}
279206
}
@@ -288,53 +215,45 @@ tasks:
288215
cat > "$MCP_CLIENT_CONFIG" << EOF
289216
{
290217
"mcpServers": {
291-
"jira-mcp": {
292-
"command": "node",
293-
"args": ["/home/node/jira-mcp/build/index.js"],
294-
"env": {
295-
"JIRA_HOST": "\${JIRA_HOST:-coakley.atlassian.net}",
296-
"JIRA_USERNAME": "\${JIRA_USERNAME:-joe@gitpod.io}",
297-
"JIRA_API_TOKEN": "\${JIRA_API_TOKEN:-your_api_token_here}",
298-
"JIRA_PROJECT_KEY": "\${JIRA_PROJECT_KEY:-MBA}",
299-
"AUTO_CREATE_TEST_TICKETS": "true",
300-
"JIRA_ACCEPTANCE_CRITERIA_FIELD": "customfield_10429",
301-
"JIRA_STORY_POINTS_FIELD": "customfield_10040",
302-
"JIRA_EPIC_LINK_FIELD": "customfield_10014"
303-
}
218+
"atlassian-mcp": {
219+
"command": "npx",
220+
"args": [
221+
"-y",
222+
"mcp-remote",
223+
"https://mcp.atlassian.com/v1/sse"
224+
],
225+
"env": {}
304226
}
305227
}
306228
}
307229
EOF
308230
309-
# Test the MCP server if credentials are available
310-
if [ -n "\$JIRA_API_TOKEN" ] && [ "\$JIRA_API_TOKEN" != "your_api_token_here" ]; then
311-
echo "Testing MCP server connection..."
312-
cd /home/node/jira-mcp
313-
314-
# Test server initialization
315-
if echo '{"jsonrpc": "2.0", "id": 1, "method": "initialize", "params": {"protocolVersion": "2024-11-05", "capabilities": {"roots": {"listChanged": true}}, "clientInfo": {"name": "test-client", "version": "1.0.0"}}}' | timeout 10 node build/index.js >/dev/null 2>&1; then
316-
echo "MCP server connection test successful"
317-
else
318-
echo "MCP server connection test failed - check credentials"
319-
fi
231+
# Test mcp-remote availability
232+
echo "Testing mcp-remote availability..."
233+
if npx -y mcp-remote --version >/dev/null 2>&1; then
234+
echo "mcp-remote is available"
235+
else
236+
echo "mcp-remote installation may be needed on first use"
320237
fi
321238
322239
# Create a simple verification script
323240
echo '#!/bin/bash' > /tmp/verify-mcp-connection.sh
324-
echo 'echo "Verifying MCP configuration..."' >> /tmp/verify-mcp-connection.sh
241+
echo 'echo "Verifying Official Atlassian MCP configuration..."' >> /tmp/verify-mcp-connection.sh
325242
echo 'echo "Server config: $([ -f ~/.config/gitpod/mcp-config.json ] && echo \"Found\" || echo \"Missing\")"' >> /tmp/verify-mcp-connection.sh
326243
echo 'echo "Generic client config: $([ -f ~/.config/mcp/client-config.json ] && echo \"Found\" || echo \"Missing\")"' >> /tmp/verify-mcp-connection.sh
327-
echo 'echo "MCP server binary: $([ -f /home/node/jira-mcp/build/index.js ] && echo \"Found\" || echo \"Missing\")"' >> /tmp/verify-mcp-connection.sh
244+
echo 'echo "mcp-remote available: $(npx -y mcp-remote --version >/dev/null 2>&1 && echo \"Yes\" || echo \"No\")"' >> /tmp/verify-mcp-connection.sh
328245
chmod +x /tmp/verify-mcp-connection.sh
329246
330-
echo "Jira MCP server and client setup complete"
247+
echo "Official Atlassian MCP server setup complete"
331248
echo "Server config: ~/.config/gitpod/mcp-config.json"
332249
echo "Generic client config: ~/.config/mcp/client-config.json"
333-
echo "Server location: /home/node/jira-mcp/"
334-
echo "Project: MBA (coakley.atlassian.net)"
335-
echo "Available tools: create-ticket, get-ticket, search-tickets, update-ticket, link-tickets, get-test-steps, add-test-steps"
250+
echo "Server endpoint: https://mcp.atlassian.com/v1/sse"
251+
echo "Authentication: OAuth 2.1 flow (browser-based)"
252+
echo "Supported services: Jira, Compass, and Confluence"
253+
echo "Available tools: Dynamic based on user permissions"
336254
echo ""
337255
echo "Run '/tmp/verify-mcp-connection.sh' to verify the setup"
256+
echo "When connecting, you'll be prompted to authenticate via browser"
338257
echo "AI assistants may need to restart to pick up the new MCP configuration"
339258
340259
seedDatabase:

‎.mcp.yaml‎

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,8 @@ mcpServers:
22
atlassian-mcp:
33
command: npx
44
args:
5-
- "@modelcontextprotocol/server-fetch"
5+
- "-y"
6+
- "mcp-remote"
67
- "https://mcp.atlassian.com/v1/sse"
78
env: {}
89

‎mcp.json‎

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -3,7 +3,8 @@
33
"atlassian-mcp": {
44
"command": "npx",
55
"args": [
6-
"@modelcontextprotocol/server-fetch",
6+
"-y",
7+
"mcp-remote",
78
"https://mcp.atlassian.com/v1/sse"
89
],
910
"env": {}

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