diff --git a/.github/workflows/check_sphinx_links.yml b/.github/workflows/check_sphinx_links.yml
index 714d34ab4..5f3719303 100644
--- a/.github/workflows/check_sphinx_links.yml
+++ b/.github/workflows/check_sphinx_links.yml
@@ -16,7 +16,7 @@ jobs:
       cancel-in-progress: true
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
diff --git a/.github/workflows/codespell.yml b/.github/workflows/codespell.yml
index 772086012..3a00cfcaa 100644
--- a/.github/workflows/codespell.yml
+++ b/.github/workflows/codespell.yml
@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repo
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
       - name: Codespell
diff --git a/.github/workflows/deploy_release.yml b/.github/workflows/deploy_release.yml
index 64a890582..f62ae7083 100644
--- a/.github/workflows/deploy_release.yml
+++ b/.github/workflows/deploy_release.yml
@@ -16,7 +16,7 @@ jobs:
       contents: write  # create the GitHub release
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
diff --git a/.github/workflows/ruff.yml b/.github/workflows/ruff.yml
index 27ef6632c..ea6e1eec3 100644
--- a/.github/workflows/ruff.yml
+++ b/.github/workflows/ruff.yml
@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repo
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
       - name: Run ruff
diff --git a/.github/workflows/run_all_tests.yml b/.github/workflows/run_all_tests.yml
index a030c17c6..546924d00 100644
--- a/.github/workflows/run_all_tests.yml
+++ b/.github/workflows/run_all_tests.yml
@@ -57,7 +57,7 @@ jobs:
           - { name: macos-python3.13-prerelease-optional   , test-tox-env: pytest-py313-prerelease-optional , python-ver: "3.13", os: macos-latest }
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
@@ -111,7 +111,7 @@ jobs:
           - { name: macos-gallery-python3.13-prerelease-optional   , test-tox-env: gallery-py313-prerelease-optional , python-ver: "3.13", os: macos-latest }
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
@@ -144,7 +144,7 @@ jobs:
           - { name: macos-python3.14-ros3   , python-ver: "3.14", os: macos-latest }
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
diff --git a/.github/workflows/run_coverage.yml b/.github/workflows/run_coverage.yml
index 32e376432..ac38ca2f1 100644
--- a/.github/workflows/run_coverage.yml
+++ b/.github/workflows/run_coverage.yml
@@ -37,7 +37,7 @@ jobs:
       PYTHON: '3.14'
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
@@ -94,7 +94,7 @@ jobs:
           - { name: linux-python3.14-ros3  , python-ver: "3.14", os: ubuntu-latest }
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
diff --git a/.github/workflows/run_hdmf_zarr_tests.yml b/.github/workflows/run_hdmf_zarr_tests.yml
index 6936b8606..0f84613b0 100644
--- a/.github/workflows/run_hdmf_zarr_tests.yml
+++ b/.github/workflows/run_hdmf_zarr_tests.yml
@@ -16,7 +16,7 @@ jobs:
       cancel-in-progress: true
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
diff --git a/.github/workflows/run_nwb_extension_tests.yml b/.github/workflows/run_nwb_extension_tests.yml
index 76e0688df..fb6a10121 100644
--- a/.github/workflows/run_nwb_extension_tests.yml
+++ b/.github/workflows/run_nwb_extension_tests.yml
@@ -58,7 +58,7 @@ jobs:
       matrix: ${{ steps.generate-matrix.outputs.matrix }}
     steps:
       - name: Checkout repo
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
 
@@ -96,7 +96,7 @@ jobs:
       fail-fast: false  # Continue testing other extensions even if one fails
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
diff --git a/.github/workflows/run_pynwb_tests.yml b/.github/workflows/run_pynwb_tests.yml
index 4e3033aa7..c63250e57 100644
--- a/.github/workflows/run_pynwb_tests.yml
+++ b/.github/workflows/run_pynwb_tests.yml
@@ -16,7 +16,7 @@ jobs:
       cancel-in-progress: true
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
diff --git a/.github/workflows/run_tests.yml b/.github/workflows/run_tests.yml
index ad912c72c..5a5202acc 100644
--- a/.github/workflows/run_tests.yml
+++ b/.github/workflows/run_tests.yml
@@ -37,7 +37,7 @@ jobs:
           - { name: macos-python3.13-upgraded-optional   , test-tox-env: pytest-py313-upgraded-optional , python-ver: "3.13", os: macos-latest }
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
@@ -91,7 +91,7 @@ jobs:
           - { name: windows-gallery-python3.14-upgraded-optional , test-tox-env: gallery-py314-upgraded-optional , python-ver: "3.14", os: windows-latest }
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
@@ -160,7 +160,7 @@ jobs:
           - { name: linux-python3.14-ros3  , python-ver: "3.14", os: ubuntu-latest }
     steps:
       - name: Checkout repo with submodules
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false
           submodules: 'recursive'
diff --git a/.github/workflows/zizmor.yml b/.github/workflows/zizmor.yml
index 0f5cd51cc..623dcfdbb 100644
--- a/.github/workflows/zizmor.yml
+++ b/.github/workflows/zizmor.yml
@@ -19,7 +19,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repo
-        uses: actions/checkout@9c091bb21b7c1c1d1991bb908d89e4e9dddfe3e0  # v7.0.0
+        uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1  # v7.0.1
         with:
           persist-credentials: false