From b312554e2734ff8caa5cf324f99016072e703233 Mon Sep 17 00:00:00 2001
From: kburke <209327+kburke@users.noreply.github.com>
Date: Mon, 5 May 2025 08:44:02 -0400
Subject: [PATCH 1/2] New fields to exclude from public responses

---
 src/schema/provenance_schema.yaml | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)

diff --git a/src/schema/provenance_schema.yaml b/src/schema/provenance_schema.yaml
index dbb3351b..de147ef6 100644
--- a/src/schema/provenance_schema.yaml
+++ b/src/schema/provenance_schema.yaml
@@ -201,6 +201,12 @@ ENTITIES:
         - lab_dataset_id
         - metadata:
           - lab_id
+          - acquisition_id
+          - library_id
+          - donor_id
+          - slide_id
+          - tissue_id
+          - parent_sample_id
     # Collection can not be derivation source but not target
     derivation:
       source: false
@@ -316,6 +322,12 @@ ENTITIES:
       - lab_dataset_id
       - metadata:
         - lab_id
+        - acquisition_id
+        - library_id
+        - donor_id
+        - slide_id
+        - tissue_id
+        - parent_sample_id
       - direct_ancestors:
         # Sample ancestors of a Dataset must have these fields removed
         - lab_tissue_sample_id
@@ -325,6 +337,12 @@ ENTITIES:
         # Both Sample and Dataset ancestors of a Dataset must have these fields removed
         - metadata:
           - lab_id
+          - acquisition_id
+          - library_id
+          - donor_id
+          - slide_id
+          - tissue_id
+          - parent_sample_id
     derivation:
       source: true
       target: true

From 9ce6d153d86920857db74f74ee23fe8ef265f8c9 Mon Sep 17 00:00:00 2001
From: kburke <209327+kburke@users.noreply.github.com>
Date: Wed, 7 May 2025 12:24:53 -0400
Subject: [PATCH 2/2] Duplicate
 excluded_properties_from_public_response:direct_ancestors YAML from Dataset
 into Publications.

---
 src/schema/provenance_schema.yaml | 18 +++++++++++++++++-
 1 file changed, 17 insertions(+), 1 deletion(-)

diff --git a/src/schema/provenance_schema.yaml b/src/schema/provenance_schema.yaml
index 13dbd250..aab5d801 100644
--- a/src/schema/provenance_schema.yaml
+++ b/src/schema/provenance_schema.yaml
@@ -687,7 +687,23 @@ ENTITIES:
     before_entity_update_validator:
       # Halt modification of entities which are "locked", such as a Dataset with status == 'Published'
       - validate_entity_not_locked_before_update
-    # Publications can be either derivation source or target
+    # Dataset can be either derivation source or target
+    excluded_properties_from_public_response:
+      - direct_ancestors:
+        # Sample ancestors of a Publication must have these fields removed
+        - lab_tissue_sample_id
+        - submission_id
+        # Dataset ancestors of a Publication must have these fields removed
+        - lab_dataset_id
+        # Both Sample and Dataset ancestors of a Publication must have these fields removed
+        - metadata:
+          - lab_id
+          - acquisition_id
+          - library_id
+          - donor_id
+          - slide_id
+          - tissue_id
+          - parent_sample_id    # Publications can be either derivation source or target
     derivation:
       source: true
       target: true