@@ -4,6 +4,7 @@ description: utility plugins and macros to control images contast and LUTs
44categories : [Annotation, Interactive, Macro, Microscopy, Montage, Utilities, Visualization]
55---
66This Update Site provides utility plugins and macros to help with handling and visualization of microscopy images
7+ If you have a question, feedback or a bug to report, you can post it on the [ Image.sc] ( https://forum.image.sc/t/looking-for-testers-channels-contrast-and-luts-manager-plugins/ ) Forum
78
89Features include:
910- Two plugins to control image contrast and LUTs (Look Up Tables)
@@ -22,8 +23,7 @@ In your imageJ app folder : place the **Image Viewer** folder on the ``plugins``
2223
2324All commands and plugins are located in the `` Plugins > Image Viewer `` menu
2425But the easiest way is to install the toolbar menu from Image_Viewer_Toolset under the red ` >> ` menu in the ImageJ window
25- ![ ] ( https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-Toolset.png?raw=true )
26- If you have a question, feedback or a bug to report, you can post it on the [ Image.sc] ( https://forum.image.sc/t/looking-for-testers-channels-contrast-and-luts-manager-plugins/ ) Forum
26+ ![ ] ( https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-Toolset.png?raw=true ) {: width ="300px"}
2727
2828___
2929
@@ -39,7 +39,7 @@ You can:
3939 - ** Min/Max:** Sets display range to the channel stack's min/max values
4040- Interface with the ** LUTs Manager** to apply LUT palettes or individual favorite LUTs
4141You can change order of LUTs in a palette directly with the mouse from the palette menu
42- ![ ] ( https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-CC-palettes.png?raw=true )
42+ ![ ] ( https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-CC-palettes.png?raw=true ) { : width ="300px"}
4343- Access more options and built-in utilities for multi-channel images via the "More" button
4444![ ] ( https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-CC-More.png?raw=true )
4545
@@ -50,7 +50,7 @@ You can change order of LUTs in a palette directly with the mouse from the palet
5050- Change LUT order with the mouse
5151- Right-click on palette to move or remove LUTs
5252- Empty palette channels default to "Grays"
53- ![ ] ( https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-LUTs-Manager.png?raw=true ) {: width ="400px "}
53+ ![ ] ( https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-LUTs-Manager.png?raw=true ) {: width ="600px "}
5454#### LUTs Finder
5555The plugin scans all LUTs in your ImageJ ` luts ` folder
5656You can use the search bar and color buttons to filter the list
@@ -71,32 +71,84 @@ Each LUT comes with an **estimated** description of its properties:
7171### Multi Tool
7272This Tool is a neutral tool
7373but it can perform many actions based on the mouse button, modifier keys (shift, ctrl, alt) and context:
74- - ** Without modifier keys:** Left-click moves image window; Or move / resize any ROI
75- {% include video src="https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-Default-Main-Tool.mp4 " %}
76- - ** Middle mouse:** Switch multichannel display (composite/color)
77- - ** Ctrl:** Mimic rectangle tool
78- {% include video src="https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-Ctrl-Rectangle.mp4 " %}
79- - ** Shift + Alt:** Local auto-contrast via box ROI around click
80- {% include video src="https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-Local-Auto-Contrast.mp4 " %}
81- - ** Alt:** Navigate Z (slice/frame) anywhere in image
82- {% include video src="https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-Alt-Slice.mp4 " %}
83- - ** Shift:** Adjust active channel contrast
84- {% include video src="https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-Shift-Contrast.mp4 " %}
74+ ##### ** Windows**
75+
76+ - ** Move Window:**
77+ Left Click and Drag (outside ROI):
78+ Moves the image window position interactively.
79+
80+ - ** Reversible Full Screen:**
81+ Double Left Click:
82+ Maximizes/minimizes the image window, reversible to original size.
83+
84+ ##### ** Composite Display Switch**
85+ - ** Switch Composite Display:**
86+ Middle Click on composite image:
87+ Toggle display mode between Composite and Color.
88+
89+ ##### ** ROI**
90+ - ** Create Rectangular ROI:**
91+ Ctrl + Left Mouse Drag:
92+ Drag to create a rectangular selection.
93+
94+ - ** Handle Polygon/Point ROI:**
95+ Drag ROI handles using Left Mouse and modify selected selection / points.
96+
97+ - ** Remove ROI:**
98+ Ctrl + Click outside the ROI removes the current ROI.
99+
100+ ##### ** Contrast**
101+ - ** Local Box Auto-Contrast:**
102+ Shift + Alt + Left Click (on non-RGB images):
103+ Creates a fixed-size box ROI and auto-adjusts contrast in its area.
104+
105+ - ** Live Contrast Adjustment:**
106+ Shift + Left Mouse Drag (non-RGB images):
107+ Drag pointer in the image to interactively adjust contrast.
108+
109+ ##### ** Stack Browsing**
110+ - ** Live Scroll through Slices/Frames:**
111+ Alt + Left Mouse Drag (on stack/multi-frame images):
112+ Drag horizontally to scroll through slices or frames.
113+
114+ ##### ** Preview Opener (Montage Browser)**
115+ - ** Open Image from Preview Opener:**
116+ Mouse Over thumbnails:
117+ Updates slice label showing the path/name of the selected thumbnail.
118+ Middle Click on a thumbnail in ‘Preview Opener’ window:
119+ Opens the corresponding file.
120+ Caps Lock ON: Opens image as ‘virtual stack’.
121+ Supports standard formats or uses Bio-Formats Importer if needed.
122+
123+ ##### Multi Tool Shortcuts Summary
124+
125+ | Mouse & Keys | Action |
126+ | --------------------| ------------------------------------------------|
127+ | Left Drag (no ROI) | Move image window |
128+ | Double Left Click | Maximize/minimize image window |
129+ | Middle Click | Composite display toggle / Preview opener open |
130+ | Ctrl + Left Drag | Create rectangle ROI |
131+ | Ctrl + Click out | Remove current ROI |
132+ | Shift + Alt + Left | Box auto-contrast |
133+ | Shift + Left Drag | Live contrast adjustment |
134+ | Alt + Left Drag | Stack/frame scroll |
135+
85136### Preview Opener
86- This command creates a montage of opened images and saves it in their directory.
87- ** How to use:**
88- 1 . Open the images you want (virtual stacks supported)
137+ This command creates a thumbnail montage of opened images and saves it in their directory
138+ Then the Multi Tool can interact with this montage to open the selected image
139+ ##### ** How to use:**
140+ 1 . Open the images you want (virtual stacks supported) from a single folder
891412 . Adjust display settings
901423 . run the command ` Create Preview Opener `
91- {% include video src="https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-Preview-Opener-.mp4 " %}
92- With the ** Multi Tool** , middle-click on a montage will open the image under the cursor—making it fast to find images within a folder
93- ** Notes:**
94- - Montage title must include “Preview Opener” (you can add text before/after)
143+ The generated montage will auto-save in the images folder
144+ With the ** Multi Tool** , middle-click on a montage to open the image under the cursor
145+ ###### ** Notes:**
95146- Keep the Preview Opener file in the images folder
147+ - Montage title must include “Preview Opener” (you can add text before/after)
96148### Other Commands
97149A small collection of utility macros:
98150- ** Split View:** Quickly create clean multichannel montages
99- ![ ] ( https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-SplitView.png?raw=true ) {: width ="400px "}
151+ ![ ] ( https://github.com/imagej/imagej.github.io/blob/main/media/Image-Viewer/Image-Viewer-SplitView.png?raw=true ) {: width ="500px "}
100152
101153- ** Auto Scale Bar:** Estimate and add scale bar. You can adjust the size and hide the text in options. This macro is adapted from [ Aleš Kladnik] ( https://forum.image.sc/t/automatic-scale-bar-in-fiji-imagej/60774 )
102154- ** Auto-Contrast** recordable macro commands similar to the Channels and Contrast buttons
0 commit comments