impl docker container for testing

Author: holgerbrandl

misc/Dockerfile

@@ -0,0 +1,20 @@
+# Base Image for kscript testing
+FROM ubuntu
+
+## update apt cache
+RUN  apt-get update
+
+RUN apt-get install -y curl unzip zip wget git
+
+## install java
+RUN  apt-get install -y default-jdk
+
+# Define commonly used JAVA_HOME variable
+ENV JAVA_HOME /usr/lib/jvm/java-8-openjdk-amd64/
+
+
+# install sdkman (see http://sdkman.io/install.html)
+RUN bash -c "curl -s 'https://get.sdkman.io' | bash"
+
+#tall kotlin and maven
+RUN /bin/bash -c 'source ~/.sdkman/bin/sdkman-init.sh && sdkman_auto_answer=true && sdk install kotlin && sdk install maven && sdk install gradle'

misc/docker_tests.sh

@@ -1,13 +1,18 @@
 #!/usr/bin/env bash
 
+
+
 # todo push image to docker registry
-docker run -it bioinfo_base
+cd ${KSCRIPT_HOME}/misc
+#docker build --no-cache -t kscript_tester .
+docker build -t kscript_tester .
+docker run -it kscript_tester
 
 #curl -Lso /bin/kscript https://raw.githubusercontent.com/holgerbrandl/kscript/abb5f4c6ee72ec90d22c0fe913284e92363cad0e/kscript && chmod u+x /bin/kscript
-curl -Lso /bin/kscript https://www.dropbox.com/s/l5g8vr0wz78y3zy/kscript?dl=1 && chmod u+x /bin/kscript
+#curl -Lso /bin/kscript https://www.dropbox.com/s/l5g8vr0wz78y3zy/kscript?dl=1 && chmod u+x /bin/kscript
 
-kscript --help
-kscript --self-update
+#kscript --help
+#kscript --self-update
 
 
 ## or using github repo
@@ -17,6 +22,13 @@ export KSCRIPT_HOME=$(pwd)
 
 gradle shadowJar && cp build/libs/kscript-0.1-SNAPSHOT-all.jar kscript.jar
 
+export PATH=$(pwd):${PATH}
 kscript --clear-cache
 
-${KSCRIPT_HOME}/test/test_suite.sh
+wget https://raw.githubusercontent.com/lehmannro/assert.sh/master/assert.sh
+chmod u+x assert.sh
+
+${KSCRIPT_HOME}/test/test_suite.sh
+
+## copy newer jar into container
+#scp brandl@scicomp-mac-12-usb:/Users/brandl/projects/kotlin/kscript/kscript.jar .

misc/experimental/kscriptD

@@ -0,0 +1,17 @@
+#!/usr/bin/env bash
+
+
+# version tag for backward compatibility with kscript v1.x
+KSCRIPT_VERSION=2.0
+
+
+## using shadow jar
+#echo $(kotlin -classpath /Users/brandl/projects/kotlin/kscript/build/libs/kscript-0.1-SNAPSHOT-all.jar kscript.app.KscriptKt "$@")
+
+## using simple jar
+#kotlin -classpath /Users/brandl/projects/kotlin/kscript/build/libs/kscript-0.1-SNAPSHOT.jar kscript.app.KscriptKt "$@"
+
+## todo inline jar
+
+#exec $(kotlin -classpath /Users/brandl/projects/kotlin/kscript/build/libs/kscript-0.1-SNAPSHOT-all.jar kscript.app.KscriptKt "$@")
+exec $(kotlin -J-agentlib:jdwp=transport=dt_socket,server=n,address=scicomp-mac-12-usb.mpi-cbg.de:8765,suspend=y -classpath ../../kscript/build/libs/kscript-0.1-SNAPSHOT-all.jar kscript.app.KscriptKt "$@")