Merge pull request #2 from labgem/add_pypi_release_wf

Add pypi release wf

Author: JeanMainguy

.github/workflows/pangbank_ci.yml

@@ -12,20 +12,22 @@ on:
 
 jobs:
   build:
-    defaults:
-      run:
-        shell: bash -el {0}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
-        os: ['ubuntu-latest', 'macos-13']
-        python-version: [3.10, 3.13] 
+        os: ['ubuntu-latest', 'macos-latest']
+        python-version: ['3.10', '3.12']
 
     steps:
     # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
     - uses: actions/checkout@v4
-  
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+    
     - name: Install PanGBank-cli
       run: |
         pip install .

pangbank_cli/main.py

@@ -323,7 +323,10 @@ def match_pangenome(
             rich_help_panel="Match parameters",
         ),
     ],
-    download: bool = Download,
+    download: Annotated[
+        bool,
+        Download,
+    ] = False,
     outdir: Annotated[
         Path,
         Outdir,

pyproject.toml

@@ -39,7 +39,7 @@ dependencies = [
     "rich>=10.0.0",
     "pydantic>=2.10.0,<3.0.0",
     "pandas>=2.0.0,<3.0.0",
-    "pangbank-api@git+ssh://git@github.com/labgem/PanGBank-api",
+    "pangbank-api>=0.1.1",
 ]