From fdb33aebefb01722d2d82b4c242c010b1b02cf78 Mon Sep 17 00:00:00 2001
From: "Mark A. Miller" <MAM@lbl.gov>
Date: Mon, 21 Apr 2025 17:27:01 -0400
Subject: [PATCH] gold_client and gold-tool fetch-studies output have same
 content

---
 Makefile                      | 181 ++++++++++++++++++++--
 make-gold-cache.Makefile      |  79 ----------
 poetry.lock                   | 275 +++++++++++++++++++++++++++++-----
 pyproject.toml                |   1 +
 sample_annotator/json_diff.py |  56 +++++++
 5 files changed, 468 insertions(+), 124 deletions(-)
 delete mode 100644 make-gold-cache.Makefile
 create mode 100644 sample_annotator/json_diff.py

diff --git a/Makefile b/Makefile
index 6a24dab..fc34d3d 100644
--- a/Makefile
+++ b/Makefile
@@ -10,21 +10,180 @@ all: clean test examples/outputs/report.tsv
 test:
 	$(RUN) pytest 2>&1 | tee logs/tests.log
 
-
 clean:
 	find examples -name "*report.tsv" -exec rm -rf {} \;
-	rm -rf assets/*bak
-	rm -rf assets/*tsv
-	rm -rf bin/*jar
-	rm -rf downloads/*db
-	rm -rf downloads/*gz
-	rm -rf downloads/*owl
-	rm -rf downloads/*tsv
-	rm -rf downloads/*zip
-	rm -rf examples/outputs/*tsv
 	rm -rf logs/*log
-	rm -rf target/*
 
 examples/outputs/report.tsv: examples/gold.json
 	$(RUN) annotate-sample -R $@ $<
 
+# review and fix readmes and poetry dependencies
+
+# see also https://github.com/microbiomedata/external-metadata-awareness/blob/751ddb6360f95f164a6605ca056e81fced59e195/Makefiles/gold.Makefile
+
+.PHONY: gold-to-mongo-all gold-to-mongo-clean load-gold-biosamples-into-mongo rebuild-gold-cache-from-mongodb
+
+gold-to-mongo-all: gold-to-mongo-clean load-gold-biosamples-into-mongo
+
+gold-to-mongo-clean:
+	rm -rf downloads/goldData.xlsx local/gold-study-ids-with-biosamples.txt local/gold-study-ids-10.tsv local/gold-studies.tsv
+
+downloads/goldData.xlsx:
+	curl -o $@ "https://gold.jgi.doe.gov/download?mode=site_excel"
+
+local/gold-studies.tsv: downloads/goldData.xlsx
+	$(RUN) xlsx-to-tsv \
+		--excel-file $< \
+		--sheet-name Study \
+		--output-file $@
+
+local/gold-study-ids-10.tsv: local/gold-studies.tsv
+	head -n 10 $< | tail -n +2 | cut -f1 > $@
+
+# Extract Study GOLD IDs that have associated Biosample GOLD IDs
+local/gold-study-ids-with-biosamples.txt: downloads/goldData.xlsx
+	date && time $(RUN) extract-study-ids-with-biosamples \
+		--excel-file $< \
+		--sheet-name 'Sequencing Project' \
+		--output-file $@.tmp && date # 8 minutes
+	sort $@.tmp | uniq > $@
+	rm -rf $@.tmp
+
+
+# (sample-annotator-py3.10) mark@mark-NUC10i7FNH:~/gitrepos/sample-annotator$ gold-tool --help
+  #Usage: gold-tool [OPTIONS] COMMAND [ARGS]...
+  #
+  #  GOLD API client with caching and MongoDB integration.
+  #
+  #Options:
+  #  -v, --verbose     Increase verbosity
+  #  -q, --quiet       Decrease verbosity
+  #  --cache-dir TEXT  Path to cache directory
+  #  --help            Show this message and exit.
+  #
+  #Commands:
+  #  fetch-studies    Fetch studies from GOLD API and save as JSON or YAML.
+  #  inspect-cache    Print information about cache contents.
+  #  load-to-mongodb  Load GOLD data into MongoDB.
+  #  rebuild-cache    Rebuild cache from MongoDB data.
+
+# gold-tool fetch-studies --help
+  #2025-04-21 16:31:07,514 - INFO - Cache initialized at cachedir with 0 records
+  #Usage: gold-tool fetch-studies [OPTIONS] IDFILE
+  #
+  #  Fetch studies from GOLD API and save as JSON or YAML.
+  #
+  #  IDFILE is a file containing GOLD study IDs (Gs...) one per line.
+  #
+  #Options:
+  #  -o, --output FILENAME           Output file
+  #  -O, --output-format [json|yaml]
+  #                                  Output format
+  #  --include-biosamples / --no-include-biosamples
+  #                                  Include biosamples in study data
+  #  --clear-cache / --no-clear-cache
+  #                                  Clear cache before fetching
+  #  -a, --authentication-file TEXT  Path to authentication file
+  #  --help                          Show this message and exit.
+
+local/gold-cache-from-gold-cache.json: local/gold-study-ids-10.tsv
+	# ~ 3 seconds/uncached study
+	# GOLD has ~ 63k studies
+	# ~ 2.5 days to fetch all studies with no hiccups
+	$(RUN) python sample_annotator/clients/gold_client.py \
+		--verbose \
+		fetch-studies \
+		--output-format json \
+		--output $@ \
+		--include-biosamples \
+		--authentication-file config/gold-key.txt \
+		$<
+
+local/gold-cache-from-gold-tool.json: local/gold-study-ids-10.tsv
+	# uses different cache keys from sample_annotator/clients/gold_client.py fetch-studies
+	# interleaved logging/tqdm usage could be improved
+	$(RUN) gold-tool fetch-studies \
+		--output $@ \
+		--output-format json \
+		--include-biosamples \
+		--authentication-file config/gold-key.txt \
+		$<
+
+local/gold-dump-diff.txt: local/gold-cache-from-gold-cache.json local/gold-cache-from-gold-tool.json
+	poetry run python sample_annotator/json_diff.py \
+	  --file1 local/gold-cache-from-gold-cache.json \
+	  --file2 local/gold-cache-from-gold-tool.json \
+	  --show-diff > $@
+
+
+#gold-tool inspect-cache --help
+#2025-04-21 16:31:59,636 - INFO - Cache initialized at cachedir with 0 records
+#Usage: gold-tool inspect-cache [OPTIONS]
+#
+#  Print information about cache contents.
+#
+#Options:
+#  --help  Show this message and exit.
+
+.PHONY: inspect-cache
+
+inspect-cache:
+	$(RUN) gold-tool inspect-cache
+
+
+# gold-tool load-to-mongodb  --help
+  #2025-04-21 16:32:44,953 - INFO - Cache initialized at cachedir with 0 records
+  #Usage: gold-tool load-to-mongodb [OPTIONS]
+  #
+  #  Load GOLD data into MongoDB.
+  #
+  #  Fetches studies, biosamples, and projects from GOLD API and stores them in
+  #  MongoDB collections.
+  #
+  #Options:
+  #  -i, --study-ids-file PATH       File containing study IDs  [required]
+  #  -u, --mongo-uri TEXT            MongoDB URI  [required]
+  #  -e, --env-file TEXT             Environment file with MongoDB credentials
+  #  -a, --authentication-file TEXT  GOLD API authentication file
+  #  --log-failures-to-file PATH     Write failures to JSON file
+  #  -r, --resume / --no-resume      Skip already processed studies
+  #  -b, --batch-size INTEGER        Number of studies per batch
+  #  -m, --max-retries INTEGER       Maximum retry attempts
+  #  --help                          Show this message and exit.
+
+# disccache purges should be performed with `rm`
+# mongodb purges should be performed with db.colelction.drop()
+
+# now supports both local and remote MongoDB servers with or without authentication.
+#
+#  Environment variables (from .env file)
+#  MONGODB_USER: MongoDB username
+#  MONGODB_PASSWORD: MongoDB password
+
+load-gold-biosamples-into-mongo: local/gold-study-ids-10.tsv
+	$(RUN) gold-tool load-to-mongodb \
+		--authentication-file config/gold-key.txt \
+		--log-failures-to-file local/gold-to-mongo-failures.json \
+		--mongo-uri "mongodb://localhost:27017/gold_cache_for_10_studies" \
+		--study-ids-file $<
+
+#gold-tool rebuild-cache  --help
+#2025-04-21 16:36:01,132 - INFO - Cache initialized at cachedir with 0 records
+#Usage: gold-tool rebuild-cache [OPTIONS]
+#
+#  Rebuild cache from MongoDB data.
+#
+#  Uses existing MongoDB collections to populate cache without making API
+#  calls.
+#
+#Options:
+#  --mongo-uri TEXT                MongoDB URI including database name
+#                                  [required]
+#  -e, --env-file TEXT             Path to .env file with MongoDB credentials
+#  -a, --authentication-file TEXT  GOLD API authentication file
+#  --help                          Show this message and exit.
+
+rebuild-gold-cache-from-mongodb:
+	$(RUN) gold-tool rebuild-cache \
+		--mongo-uri "mongodb://localhost:27017/gold_cache_for_10_studies" \
+		--authentication-file config/gold-key.txt
diff --git a/make-gold-cache.Makefile b/make-gold-cache.Makefile
deleted file mode 100644
index c8415bf..0000000
--- a/make-gold-cache.Makefile
+++ /dev/null
@@ -1,79 +0,0 @@
-# review and fix readmes and poetry dependencies
-
-# see also https://github.com/microbiomedata/external-metadata-awareness/blob/751ddb6360f95f164a6605ca056e81fced59e195/Makefiles/gold.Makefile
-
-RUN=poetry run
-
-.PHONY: gold-to-mongo-all gold-to-mongo-clean load-gold-biosamples-into-mongo rebuild-gold-cache-from-mongodb
-
-gold-to-mongo-all: gold-to-mongo-clean load-gold-biosamples-into-mongo
-
-gold-to-mongo-clean:
-	rm -rf downloads/goldData.xlsx local/gold-study-ids-with-biosamples.txt
-
-downloads/goldData.xlsx:
-	curl -o $@ "https://gold.jgi.doe.gov/download?mode=site_excel"
-
-local/gold-studies.tsv: downloads/goldData.xlsx
-	$(RUN) xlsx-to-tsv \
-		--excel-file $< \
-		--sheet-name Study \
-		--output-file $@
-
-# Extract Study GOLD IDs that have associated Biosample GOLD IDs
-local/gold-study-ids-with-biosamples.txt: downloads/goldData.xlsx
-	date && time $(RUN) extract-study-ids-with-biosamples \
-		--excel-file $< \
-		--sheet-name 'Sequencing Project' \
-		--output-file $@.tmp && date # 8 minutes
-	sort $@.tmp | uniq > $@
-	rm -rf $@.tmp
-
-#  gold-to-mongo no supports both local and remote MongoDB servers with or without authentication.
-#
-#  Environment variables (from .env file)
-#  MONGODB_USER: MongoDB username
-#  MONGODB_PASSWORD: MongoDB password
-
-#	# 		--purge-mongodb
-#	# 		--purge-diskcache
-#	# 		--env-file
-
-#load-gold-biosamples-into-mongo: local/gold-study-ids-with-biosamples.txt
-#	$(RUN) gold-to-mongo \
-#		--authentication-file config/gold-key.txt \
-#		--cache-dir cache_from_local_mongodb \
-#		--env-file local/.env.27778 \
-#		--log-failures-to-file local/gold-to-mongo-failures.json \
-#		--mongo-uri "mongodb://localhost:27778/staging?directConnection=true&authMechanism=DEFAULT&authSource=admin" \
-#		--study-ids-file $<
-
-
-load-gold-biosamples-into-mongo: local/gold-study-ids-with-biosamples.txt
-	$(RUN) gold-to-mongo \
-		--authentication-file config/gold-key.txt \
-		--cache-dir cache_from_local_mongodb \
-		--log-failures-to-file local/gold-to-mongo-failures.json \
-		--mongo-uri "mongodb://localhost:27017/gold_metadata_2" \
-		--study-ids-file $<
-
-rebuild-gold-cache-from-mongodb:
-	poetry run rebuild-gold-cache \
-		--mongo-uri "mongodb://localhost:27017/gold_metadata" \
-		--authentication-file config/gold-key.txt \
-		--cache-dir cache_from_local_mongodb
-
-
-local/gold-cache.json: local/gold-studies.tsv
-	# ~ 3 seconds/uncached study
-	# GOLD has ~ 63k studies
-	# ~ 2.5 days to fetch all studies with no hiccups
-	$(RUN) python sample_annotator/clients/gold_client.py \
-		--verbose \
-		fetch-studies \
-		--output-format json \
-		--output $@ \
-		--include-biosamples \
-		--authentication-file config/gold-key.txt \
-		$<
-
diff --git a/poetry.lock b/poetry.lock
index 1bf71c0..143c1e7 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 2.1.1 and should not be changed by hand.
 
 [[package]]
 name = "alabaster"
@@ -6,6 +6,7 @@ version = "1.0.0"
 description = "A light, configurable Sphinx theme"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "alabaster-1.0.0-py3-none-any.whl", hash = "sha256:fc6786402dc3fcb2de3cabd5fe455a2db534b371124f1f21de8731783dec828b"},
     {file = "alabaster-1.0.0.tar.gz", hash = "sha256:c00dca57bca26fa62a6d7d0a9fcce65f3e026e9bfe33e9c538fd3fbb2144fd9e"},
@@ -17,6 +18,7 @@ version = "0.7.0"
 description = "Reusable constraint types to use with typing.Annotated"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
     {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
@@ -28,6 +30,7 @@ version = "4.9.3"
 description = "ANTLR 4.9.3 runtime for Python 3.7"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
 ]
@@ -38,6 +41,7 @@ version = "1.3.0"
 description = "Better dates & times for Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
     {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
@@ -57,18 +61,19 @@ version = "25.3.0"
 description = "Classes Without Boilerplate"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "attrs-25.3.0-py3-none-any.whl", hash = "sha256:427318ce031701fea540783410126f03899a97ffc6f61596ad581ac2e40e3bc3"},
     {file = "attrs-25.3.0.tar.gz", hash = "sha256:75d7cefc7fb576747b2c81b4442d4d4a1ce0900973527c011d1030fd3bf4af1b"},
 ]
 
 [package.extras]
-benchmark = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
-cov = ["cloudpickle", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
-dev = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+benchmark = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-codspeed", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
+cov = ["cloudpickle ; platform_python_implementation == \"CPython\"", "coverage[toml] (>=5.3)", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
+dev = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pre-commit-uv", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
 docs = ["cogapp", "furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier"]
-tests = ["cloudpickle", "hypothesis", "mypy (>=1.11.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
-tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"]
+tests = ["cloudpickle ; platform_python_implementation == \"CPython\"", "hypothesis", "mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-xdist[psutil]"]
+tests-mypy = ["mypy (>=1.11.1) ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\"", "pytest-mypy-plugins ; platform_python_implementation == \"CPython\" and python_version >= \"3.10\""]
 
 [[package]]
 name = "autopep8"
@@ -76,6 +81,7 @@ version = "2.3.2"
 description = "A tool that automatically formats Python code to conform to the PEP 8 style guide"
 optional = false
 python-versions = ">=3.9"
+groups = ["dev"]
 files = [
     {file = "autopep8-2.3.2-py2.py3-none-any.whl", hash = "sha256:ce8ad498672c845a0c3de2629c15b635ec2b05ef8177a6e7c91c74f3e9b51128"},
     {file = "autopep8-2.3.2.tar.gz", hash = "sha256:89440a4f969197b69a995e4ce0661b031f455a9f776d2c5ba3dbd83466931758"},
@@ -91,13 +97,14 @@ version = "2.17.0"
 description = "Internationalization utilities"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "babel-2.17.0-py3-none-any.whl", hash = "sha256:4d0b53093fdfb4b21c92b5213dba5a1b23885afa8383709427046b21c366e5f2"},
     {file = "babel-2.17.0.tar.gz", hash = "sha256:0c54cffb19f690cdcc52a3b50bcbf71e07a808d1c80d549f2459b9d2cf0afb9d"},
 ]
 
 [package.extras]
-dev = ["backports.zoneinfo", "freezegun (>=1.0,<2.0)", "jinja2 (>=3.0)", "pytest (>=6.0)", "pytest-cov", "pytz", "setuptools", "tzdata"]
+dev = ["backports.zoneinfo ; python_version < \"3.9\"", "freezegun (>=1.0,<2.0)", "jinja2 (>=3.0)", "pytest (>=6.0)", "pytest-cov", "pytz", "setuptools", "tzdata ; sys_platform == \"win32\""]
 
 [[package]]
 name = "backrefs"
@@ -105,6 +112,7 @@ version = "5.8"
 description = "A wrapper around re and regex that adds additional back references."
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "backrefs-5.8-py310-none-any.whl", hash = "sha256:c67f6638a34a5b8730812f5101376f9d41dc38c43f1fdc35cb54700f6ed4465d"},
     {file = "backrefs-5.8-py311-none-any.whl", hash = "sha256:2e1c15e4af0e12e45c8701bd5da0902d326b2e200cafcd25e49d9f06d44bb61b"},
@@ -123,6 +131,7 @@ version = "4.13.4"
 description = "Screen-scraping library"
 optional = false
 python-versions = ">=3.7.0"
+groups = ["main"]
 files = [
     {file = "beautifulsoup4-4.13.4-py3-none-any.whl", hash = "sha256:9bbbb14bfde9d79f38b8cd5f8c7c85f4b8f2523190ebed90e950a8dea4cb1c4b"},
     {file = "beautifulsoup4-4.13.4.tar.gz", hash = "sha256:dbb3c4e1ceae6aefebdaf2423247260cd062430a410e38c66f2baa50a8437195"},
@@ -145,6 +154,7 @@ version = "0.11.35"
 description = "Integrated registry of biological databases and nomenclatures"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "bioregistry-0.11.35-py3-none-any.whl", hash = "sha256:64713a6595190175d506f2053b1599707a8cf266a2ba44cff3c2e29b71063f90"},
     {file = "bioregistry-0.11.35.tar.gz", hash = "sha256:f3c57638c193161674f3569312dd6c3a3f99ace862a5c8e0c7986c06e30815d0"},
@@ -176,6 +186,7 @@ version = "24.10.0"
 description = "The uncompromising code formatter."
 optional = false
 python-versions = ">=3.9"
+groups = ["dev"]
 files = [
     {file = "black-24.10.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e6668650ea4b685440857138e5fe40cde4d652633b1bdffc62933d0db4ed9812"},
     {file = "black-24.10.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:1c536fcf674217e87b8cc3657b81809d3c085d7bf3ef262ead700da345bfa6ea"},
@@ -222,6 +233,7 @@ version = "5.5.2"
 description = "Extensible memoizing collections and decorators"
 optional = false
 python-versions = ">=3.7"
+groups = ["dev"]
 files = [
     {file = "cachetools-5.5.2-py3-none-any.whl", hash = "sha256:d26a22bcc62eb95c3beabd9f1ee5e820d3d2704fe2967cbe350e20c8ffcd3f0a"},
     {file = "cachetools-5.5.2.tar.gz", hash = "sha256:1a661caa9175d26759571b2e19580f9d6393969e5dfca11fdb1f947a23e640d4"},
@@ -233,6 +245,7 @@ version = "2025.1.31"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
+groups = ["main", "dev"]
 files = [
     {file = "certifi-2025.1.31-py3-none-any.whl", hash = "sha256:ca78db4565a652026a4db2bcdf68f2fb589ea80d0be70e03929ed730746b84fe"},
     {file = "certifi-2025.1.31.tar.gz", hash = "sha256:3d5da6925056f6f18f119200434a4780a94263f10d1c21d032a6f6b2baa20651"},
@@ -244,6 +257,7 @@ version = "0.2.1"
 description = "rdflib collections flattening graph"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "CFGraph-0.2.1.tar.gz", hash = "sha256:b57fe7044a10b8ff65aa3a8a8ddc7d4cd77bf511b42e57289cd52cbc29f8fe74"},
 ]
@@ -257,6 +271,7 @@ version = "5.2.0"
 description = "Universal encoding detector for Python 3"
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "dev"]
 files = [
     {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
     {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
@@ -268,6 +283,7 @@ version = "3.4.1"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "dev"]
 files = [
     {file = "charset_normalizer-3.4.1-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:91b36a978b5ae0ee86c394f5a54d6ef44db1de0815eb43de826d41d21e4af3de"},
     {file = "charset_normalizer-3.4.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:7461baadb4dc00fd9e0acbe254e3d7d2112e7f92ced2adc96e54ef6501c5f176"},
@@ -369,6 +385,7 @@ version = "8.1.8"
 description = "Composable command line interface toolkit"
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "dev"]
 files = [
     {file = "click-8.1.8-py3-none-any.whl", hash = "sha256:63c132bbbed01578a06712a2d1f497bb62d9c1c0d329b7903a866228027263b2"},
     {file = "click-8.1.8.tar.gz", hash = "sha256:ed53c9d8990d83c2a27deae68e4ee337473f6330c040a31d4225c9574d16096a"},
@@ -383,6 +400,7 @@ version = "0.4.0"
 description = "Logging integration for Click"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "click-log-0.4.0.tar.gz", hash = "sha256:3970f8570ac54491237bcdb3d8ab5e3eef6c057df29f8c3d1151a51a9c23b975"},
     {file = "click_log-0.4.0-py2.py3-none-any.whl", hash = "sha256:a43e394b528d52112af599f2fc9e4b7cf3c15f94e53581f74fa6867e68c91756"},
@@ -397,6 +415,7 @@ version = "0.4.6"
 description = "Cross-platform colored terminal text."
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+groups = ["main", "dev"]
 files = [
     {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
@@ -408,6 +427,7 @@ version = "0.9.1"
 description = "Python parser for the CommonMark Markdown spec"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "commonmark-0.9.1-py2.py3-none-any.whl", hash = "sha256:da2f38c92590f83de410ba1a3cbceafbc74fee9def35f9251ba9a971d6d66fd9"},
     {file = "commonmark-0.9.1.tar.gz", hash = "sha256:452f9dc859be7f06631ddcb328b6919c67984aca654e5fefb3914d54691aed60"},
@@ -422,6 +442,7 @@ version = "1.3.2"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 optional = false
 python-versions = ">=3.10"
+groups = ["dev"]
 files = [
     {file = "contourpy-1.3.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:ba38e3f9f330af820c4b27ceb4b9c7feee5fe0493ea53a8720f4792667465934"},
     {file = "contourpy-1.3.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:dc41ba0714aa2968d1f8674ec97504a8f7e334f48eeacebcaa6256213acb0989"},
@@ -498,6 +519,7 @@ version = "0.10.12"
 description = "Idiomatic conversion between URIs and compact URIs (CURIEs)"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "curies-0.10.12-py3-none-any.whl", hash = "sha256:1d3982cc1f20333bec1029ee5bb51b67c769f0f703df329a6d198382df99b765"},
     {file = "curies-0.10.12.tar.gz", hash = "sha256:cb48c85fee623fd83dcca4fb609bb92952d78dffc84404b6c8388f6999582e2c"},
@@ -522,6 +544,7 @@ version = "0.12.1"
 description = "Composable style cycles"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "cycler-0.12.1-py3-none-any.whl", hash = "sha256:85cef7cff222d8644161529808465972e51340599459b8ac3ccbac5a854e0d30"},
     {file = "cycler-0.12.1.tar.gz", hash = "sha256:88bb128f02ba341da8ef447245a9e138fae777f6a23943da4540077d3601eb1c"},
@@ -531,12 +554,32 @@ files = [
 docs = ["ipython", "matplotlib", "numpydoc", "sphinx"]
 tests = ["pytest", "pytest-cov", "pytest-xdist"]
 
+[[package]]
+name = "deepdiff"
+version = "8.4.2"
+description = "Deep Difference and Search of any Python object/data. Recreate objects by adding adding deltas to each other."
+optional = false
+python-versions = ">=3.8"
+groups = ["main"]
+files = [
+    {file = "deepdiff-8.4.2-py3-none-any.whl", hash = "sha256:7e39e5b26f3747c54f9d0e8b9b29daab670c3100166b77cc0185d5793121b099"},
+    {file = "deepdiff-8.4.2.tar.gz", hash = "sha256:5c741c0867ebc7fcb83950ad5ed958369c17f424e14dee32a11c56073f4ee92a"},
+]
+
+[package.dependencies]
+orderly-set = ">=5.3.0,<6"
+
+[package.extras]
+cli = ["click (==8.1.8)", "pyyaml (==6.0.2)"]
+optimize = ["orjson"]
+
 [[package]]
 name = "deprecated"
 version = "1.2.18"
 description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
+groups = ["main", "dev"]
 files = [
     {file = "Deprecated-1.2.18-py2.py3-none-any.whl", hash = "sha256:bd5011788200372a32418f888e326a09ff80d0214bd961147cfed01b5c018eec"},
     {file = "deprecated-1.2.18.tar.gz", hash = "sha256:422b6f6d859da6f2ef57857761bfb392480502a64c3028ca9bbe86085d72115d"},
@@ -546,7 +589,7 @@ files = [
 wrapt = ">=1.10,<2"
 
 [package.extras]
-dev = ["PyTest", "PyTest-Cov", "bump2version (<1)", "setuptools", "tox"]
+dev = ["PyTest", "PyTest-Cov", "bump2version (<1)", "setuptools ; python_version >= \"3.12\"", "tox"]
 
 [[package]]
 name = "deptry"
@@ -554,6 +597,7 @@ version = "0.21.2"
 description = "A command line utility to check for unused, missing and transitive dependencies in a Python project."
 optional = false
 python-versions = ">=3.9"
+groups = ["dev"]
 files = [
     {file = "deptry-0.21.2-cp39-abi3-macosx_10_12_x86_64.whl", hash = "sha256:e3b9e0c5ee437240b65e61107b5777a12064f78f604bf9f181a96c9b56eb896d"},
     {file = "deptry-0.21.2-cp39-abi3-macosx_11_0_arm64.whl", hash = "sha256:d76bbf48bd62ecc44ca3d414769bd4b7956598d23d9ccb42fd359b831a31cab2"},
@@ -586,6 +630,7 @@ version = "5.6.3"
 description = "Disk Cache -- Disk and file backed persistent cache."
 optional = false
 python-versions = ">=3"
+groups = ["main"]
 files = [
     {file = "diskcache-5.6.3-py3-none-any.whl", hash = "sha256:5e31b2d5fbad117cc363ebaf6b689474db18a1f6438bc82358b024abd4c2ca19"},
     {file = "diskcache-5.6.3.tar.gz", hash = "sha256:2c3a3fa2743d8535d832ec61c2054a1641f41775aa7c556758a109941e33e4fc"},
@@ -597,6 +642,7 @@ version = "0.3.9"
 description = "Distribution utilities"
 optional = false
 python-versions = "*"
+groups = ["dev"]
 files = [
     {file = "distlib-0.3.9-py2.py3-none-any.whl", hash = "sha256:47f8c22fd27c27e25a65601af709b38e4f0a45ea4fc2e710f65755fa8caaaf87"},
     {file = "distlib-0.3.9.tar.gz", hash = "sha256:a60f20dea646b8a33f3e7772f74dc0b2d0772d2837ee1342a00645c81edf9403"},
@@ -608,6 +654,7 @@ version = "2.7.0"
 description = "DNS toolkit"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "dnspython-2.7.0-py3-none-any.whl", hash = "sha256:b4c34b7d10b51bcc3a5071e7b8dee77939f1e878477eeecc965e9835f63c6c86"},
     {file = "dnspython-2.7.0.tar.gz", hash = "sha256:ce9c432eda0dc91cf618a5cedf1a4e142651196bbcd2c80e89ed5a907e5cfaf1"},
@@ -628,6 +675,7 @@ version = "0.6.2"
 description = "Pythonic argument parser, that will make you smile"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "docopt-0.6.2.tar.gz", hash = "sha256:49b3a825280bd66b3aa83585ef59c4a8c82f2c8a522dbe754a8bc8d08c85c491"},
 ]
@@ -638,6 +686,7 @@ version = "0.21.2"
 description = "Docutils -- Python Documentation Utilities"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "docutils-0.21.2-py3-none-any.whl", hash = "sha256:dafca5b9e384f0e419294eb4d2ff9fa826435bf15f15b7bd45723e8ad76811b2"},
     {file = "docutils-0.21.2.tar.gz", hash = "sha256:3a6b18732edf182daa3cd12775bbb338cf5691468f91eeeb109deff6ebfa986f"},
@@ -649,6 +698,7 @@ version = "0.17.0"
 description = "EditorConfig File Locator and Interpreter for Python"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "EditorConfig-0.17.0-py3-none-any.whl", hash = "sha256:fe491719c5f65959ec00b167d07740e7ffec9a3f362038c72b289330b9991dfc"},
     {file = "editorconfig-0.17.0.tar.gz", hash = "sha256:8739052279699840065d3a9f5c125d7d5a98daeefe53b0e5274261d77cb49aa2"},
@@ -660,6 +710,7 @@ version = "2.0.0"
 description = "An implementation of lxml.xmlfile for the standard library"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "et_xmlfile-2.0.0-py3-none-any.whl", hash = "sha256:7a91720bc756843502c3b7504c77b8fe44217c85c537d85037f0f536151b2caa"},
     {file = "et_xmlfile-2.0.0.tar.gz", hash = "sha256:dab3f4764309081ce75662649be815c4c9081e88f0837825f90fd28317d4da54"},
@@ -671,6 +722,8 @@ version = "1.2.2"
 description = "Backport of PEP 654 (exception groups)"
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "dev"]
+markers = "python_version < \"3.11\""
 files = [
     {file = "exceptiongroup-1.2.2-py3-none-any.whl", hash = "sha256:3111b9d131c238bec2f8f516e123e14ba243563fb135d3fe885990585aa7795b"},
     {file = "exceptiongroup-1.2.2.tar.gz", hash = "sha256:47c2edf7c6738fafb49fd34290706d1a1a2f4d1c6df275526b62cbb4aa5393cc"},
@@ -685,6 +738,7 @@ version = "3.18.0"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.9"
+groups = ["dev"]
 files = [
     {file = "filelock-3.18.0-py3-none-any.whl", hash = "sha256:c401f4f8377c4464e6db25fff06205fd89bdd83b65eb0488ed1b160f780e21de"},
     {file = "filelock-3.18.0.tar.gz", hash = "sha256:adbc88eabb99d2fec8c9c1b229b171f18afa655400173ddc653d5d01501fb9f2"},
@@ -693,7 +747,7 @@ files = [
 [package.extras]
 docs = ["furo (>=2024.8.6)", "sphinx (>=8.1.3)", "sphinx-autodoc-typehints (>=3)"]
 testing = ["covdefaults (>=2.3)", "coverage (>=7.6.10)", "diff-cover (>=9.2.1)", "pytest (>=8.3.4)", "pytest-asyncio (>=0.25.2)", "pytest-cov (>=6)", "pytest-mock (>=3.14)", "pytest-timeout (>=2.3.1)", "virtualenv (>=20.28.1)"]
-typing = ["typing-extensions (>=4.12.2)"]
+typing = ["typing-extensions (>=4.12.2) ; python_version < \"3.11\""]
 
 [[package]]
 name = "fonttools"
@@ -701,6 +755,7 @@ version = "4.57.0"
 description = "Tools to manipulate font files"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "fonttools-4.57.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:babe8d1eb059a53e560e7bf29f8e8f4accc8b6cfb9b5fd10e485bde77e71ef41"},
     {file = "fonttools-4.57.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:81aa97669cd726349eb7bd43ca540cf418b279ee3caba5e2e295fb4e8f841c02"},
@@ -755,18 +810,18 @@ files = [
 ]
 
 [package.extras]
-all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "pycairo", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0)", "xattr", "zopfli (>=0.1.4)"]
+all = ["brotli (>=1.0.1) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\"", "fs (>=2.2.0,<3)", "lxml (>=4.0)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres ; platform_python_implementation == \"PyPy\"", "pycairo", "scipy ; platform_python_implementation != \"PyPy\"", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0) ; python_version <= \"3.12\"", "xattr ; sys_platform == \"darwin\"", "zopfli (>=0.1.4)"]
 graphite = ["lz4 (>=1.7.4.2)"]
-interpolatable = ["munkres", "pycairo", "scipy"]
+interpolatable = ["munkres ; platform_python_implementation == \"PyPy\"", "pycairo", "scipy ; platform_python_implementation != \"PyPy\""]
 lxml = ["lxml (>=4.0)"]
 pathops = ["skia-pathops (>=0.5.0)"]
 plot = ["matplotlib"]
 repacker = ["uharfbuzz (>=0.23.0)"]
 symfont = ["sympy"]
-type1 = ["xattr"]
+type1 = ["xattr ; sys_platform == \"darwin\""]
 ufo = ["fs (>=2.2.0,<3)"]
-unicode = ["unicodedata2 (>=15.1.0)"]
-woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
+unicode = ["unicodedata2 (>=15.1.0) ; python_version <= \"3.12\""]
+woff = ["brotli (>=1.0.1) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\"", "zopfli (>=0.1.4)"]
 
 [[package]]
 name = "fqdn"
@@ -774,6 +829,7 @@ version = "1.5.1"
 description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
 optional = false
 python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
+groups = ["main"]
 files = [
     {file = "fqdn-1.5.1-py3-none-any.whl", hash = "sha256:3a179af3761e4df6eb2e026ff9e1a3033d3587bf980a0b1b2e1e5d08d7358014"},
     {file = "fqdn-1.5.1.tar.gz", hash = "sha256:105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f"},
@@ -785,6 +841,7 @@ version = "2.1.0"
 description = "Copy your docs directly to the gh-pages branch."
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "ghp-import-2.1.0.tar.gz", hash = "sha256:9c535c4c61193c2df8871222567d7fd7e5014d835f97dc7b7439069e2413d343"},
     {file = "ghp_import-2.1.0-py3-none-any.whl", hash = "sha256:8337dd7b50877f163d4c0289bc1f1c7f127550241988d568c1db512c4324a619"},
@@ -802,6 +859,7 @@ version = "0.1"
 description = "Find the root of your git repo"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "git_root-0.1-py3-none-any.whl", hash = "sha256:9642e133327066cdfb062da63a57512bd9b29492e01b03e25c316ba6b48636cf"},
     {file = "git_root-0.1.tar.gz", hash = "sha256:b1b28987b54a51f73c9e35ca70f0b9a4d876cea017a1eefcf0cf7bc163ea1f8a"},
@@ -813,6 +871,7 @@ version = "4.10.0"
 description = "Python client library for Google Maps Platform"
 optional = false
 python-versions = ">=3.5"
+groups = ["main"]
 files = [
     {file = "googlemaps-4.10.0.tar.gz", hash = "sha256:3055fcbb1aa262a9159b589b5e6af762b10e80634ae11c59495bd44867e47d88"},
 ]
@@ -826,6 +885,7 @@ version = "0.20.3"
 description = "Simple Python interface for Graphviz"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "graphviz-0.20.3-py3-none-any.whl", hash = "sha256:81f848f2904515d8cd359cc611faba817598d2feaac4027b266aa3eda7b3dde5"},
     {file = "graphviz-0.20.3.zip", hash = "sha256:09d6bc81e6a9fa392e7ba52135a9d49f1ed62526f96499325930e87ca1b5925d"},
@@ -842,6 +902,8 @@ version = "3.2.0"
 description = "Lightweight in-process concurrent programming"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
+markers = "python_version < \"3.14\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"
 files = [
     {file = "greenlet-3.2.0-cp310-cp310-macosx_11_0_universal2.whl", hash = "sha256:b7a7b7f2bad3ca72eb2fa14643f1c4ca11d115614047299d89bc24a3b11ddd09"},
     {file = "greenlet-3.2.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:60e77242e38e99ecaede853755bbd8165e0b20a2f1f3abcaa6f0dceb826a7411"},
@@ -910,6 +972,7 @@ version = "0.9.1"
 description = "Honey Badger reader - a generic file/url/string open and read tool"
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "dev"]
 files = [
     {file = "hbreader-0.9.1-py3-none-any.whl", hash = "sha256:9a6e76c9d1afc1b977374a5dc430a1ebb0ea0488205546d4678d6e31cc5f6801"},
     {file = "hbreader-0.9.1.tar.gz", hash = "sha256:d2c132f8ba6276d794c66224c3297cec25c8079d0a4cf019c061611e0a3b94fa"},
@@ -921,6 +984,7 @@ version = "3.10"
 description = "Internationalized Domain Names in Applications (IDNA)"
 optional = false
 python-versions = ">=3.6"
+groups = ["main", "dev"]
 files = [
     {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"},
     {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"},
@@ -935,6 +999,7 @@ version = "1.4.1"
 description = "Getting image size from png/jpeg/jpeg2000/gif file"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+groups = ["main"]
 files = [
     {file = "imagesize-1.4.1-py2.py3-none-any.whl", hash = "sha256:0d8d18d08f840c19d0ee7ca1fd82490fdc3729b7ac93f49870406ddde8ef8d8b"},
     {file = "imagesize-1.4.1.tar.gz", hash = "sha256:69150444affb9cb0d5cc5a92b3676f0b2fb7cd9ae39e947a5e11a36b4497cd4a"},
@@ -946,6 +1011,7 @@ version = "7.5.0"
 description = "Correctly generate plurals, singular nouns, ordinals, indefinite articles"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "inflect-7.5.0-py3-none-any.whl", hash = "sha256:2aea70e5e70c35d8350b8097396ec155ffd68def678c7ff97f51aa69c1d92344"},
     {file = "inflect-7.5.0.tar.gz", hash = "sha256:faf19801c3742ed5a05a8ce388e0d8fe1a07f8d095c82201eb904f5d27ad571f"},
@@ -956,7 +1022,7 @@ more_itertools = ">=8.5.0"
 typeguard = ">=4.0.1"
 
 [package.extras]
-check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\""]
 cover = ["pytest-cov"]
 doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 enabler = ["pytest-enabler (>=2.2)"]
@@ -969,6 +1035,7 @@ version = "2.1.0"
 description = "brain-dead simple config-ini parsing"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "iniconfig-2.1.0-py3-none-any.whl", hash = "sha256:9deba5723312380e77435581c6bf4935c94cbfab9b1ed33ef8d238ea168eb760"},
     {file = "iniconfig-2.1.0.tar.gz", hash = "sha256:3abbd2e30b36733fee78f9c7f7308f2d0050e88f0087fd25c2645f63c773e1c7"},
@@ -980,6 +1047,7 @@ version = "0.7.2"
 description = "An ISO 8601 date/time/duration parser and formatter"
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "dev"]
 files = [
     {file = "isodate-0.7.2-py3-none-any.whl", hash = "sha256:28009937d8031054830160fce6d409ed342816b543597cece116d966c6d99e15"},
     {file = "isodate-0.7.2.tar.gz", hash = "sha256:4cd1aa0f43ca76f4a6c6c0292a85f40b35ec2e43e315b59f06e6d32171a953e6"},
@@ -991,6 +1059,7 @@ version = "20.11.0"
 description = "Operations with ISO 8601 durations"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "isoduration-20.11.0-py3-none-any.whl", hash = "sha256:b2904c2a4228c3d44f409c8ae8e2370eb21a26f7ac2ec5446df141dde3452042"},
     {file = "isoduration-20.11.0.tar.gz", hash = "sha256:ac2f9015137935279eac671f94f89eb00584f940f5dc49462a0c4ee692ba1bd9"},
@@ -1005,6 +1074,7 @@ version = "3.1.6"
 description = "A very fast and expressive template engine."
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "jinja2-3.1.6-py3-none-any.whl", hash = "sha256:85ece4451f492d0c13c5dd7c13a64681a86afae63a5f347908daf103ce6d2f67"},
     {file = "jinja2-3.1.6.tar.gz", hash = "sha256:0137fb05990d35f1275a587e9aee6d56da821fc83491a0fb838183be43f66d6d"},
@@ -1022,6 +1092,7 @@ version = "1.4.2"
 description = "Lightweight pipelining with Python functions"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "joblib-1.4.2-py3-none-any.whl", hash = "sha256:06d478d5674cbc267e7496a410ee875abd68e4340feff4490bcb7afb88060ae6"},
     {file = "joblib-1.4.2.tar.gz", hash = "sha256:2382c5816b2636fbd20a09e0f4e9dad4736765fdfb7dca582943b9c1366b3f0e"},
@@ -1033,6 +1104,7 @@ version = "1.15.4"
 description = "JavaScript unobfuscator and beautifier."
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "jsbeautifier-1.15.4-py3-none-any.whl", hash = "sha256:72f65de312a3f10900d7685557f84cb61a9733c50dcc27271a39f5b0051bf528"},
     {file = "jsbeautifier-1.15.4.tar.gz", hash = "sha256:5bb18d9efb9331d825735fbc5360ee8f1aac5e52780042803943aa7f854f7592"},
@@ -1048,6 +1120,7 @@ version = "0.1.9"
 description = "Python library for denormalizing nested dicts or json objects to tables and back"
 optional = false
 python-versions = ">=3.7.0"
+groups = ["main", "dev"]
 files = [
     {file = "json_flattener-0.1.9-py3-none-any.whl", hash = "sha256:6b027746f08bf37a75270f30c6690c7149d5f704d8af1740c346a3a1236bc941"},
     {file = "json_flattener-0.1.9.tar.gz", hash = "sha256:84cf8523045ffb124301a602602201665fcb003a171ece87e6f46ed02f7f0c15"},
@@ -1063,6 +1136,7 @@ version = "1.3.1"
 description = "JSON as python objects"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "jsonasobj-1.3.1-py3-none-any.whl", hash = "sha256:b9e329dc1ceaae7cf5d5b214684a0b100e0dad0be6d5bbabac281ec35ddeca65"},
     {file = "jsonasobj-1.3.1.tar.gz", hash = "sha256:d52e0544a54a08f6ea3f77fa3387271e3648655e0eace2f21e825c26370e44a2"},
@@ -1074,6 +1148,7 @@ version = "1.0.4"
 description = "JSON as python objects - version 2"
 optional = false
 python-versions = ">=3.6"
+groups = ["main", "dev"]
 files = [
     {file = "jsonasobj2-1.0.4-py3-none-any.whl", hash = "sha256:12e86f86324d54fcf60632db94ea74488d5314e3da554c994fe1e2c6f29acb79"},
     {file = "jsonasobj2-1.0.4.tar.gz", hash = "sha256:f50b1668ef478004aa487b2d2d094c304e5cb6b79337809f4a1f2975cc7fbb4e"},
@@ -1088,6 +1163,7 @@ version = "1.33"
 description = "Apply JSON-Patches (RFC 6902)"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
+groups = ["main"]
 files = [
     {file = "jsonpatch-1.33-py2.py3-none-any.whl", hash = "sha256:0ae28c0cd062bbd8b8ecc26d7d164fbbea9652a1a3693f3b956c1eae5145dade"},
     {file = "jsonpatch-1.33.tar.gz", hash = "sha256:9fcd4009c41e6d12348b4a0ff2563ba56a2923a7dfee731d004e212e1ee5030c"},
@@ -1102,8 +1178,11 @@ version = "1.7.0"
 description = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "jsonpath-ng-1.7.0.tar.gz", hash = "sha256:f6f5f7fd4e5ff79c785f1573b394043b39849fb2bb47bcead935d12b00beab3c"},
+    {file = "jsonpath_ng-1.7.0-py2-none-any.whl", hash = "sha256:898c93fc173f0c336784a3fa63d7434297544b7198124a68f9a3ef9597b0ae6e"},
+    {file = "jsonpath_ng-1.7.0-py3-none-any.whl", hash = "sha256:f3d7f9e848cba1b6da28c55b1c26ff915dc9e0b1ba7e752a53d6da8d5cbd00b6"},
 ]
 
 [package.dependencies]
@@ -1115,6 +1194,7 @@ version = "3.0.0"
 description = "Identify specific nodes in a JSON document (RFC 6901)"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942"},
     {file = "jsonpointer-3.0.0.tar.gz", hash = "sha256:2b2d729f2091522d61c3b31f82e11870f60b68f43fbc705cb76bf4b832af59ef"},
@@ -1126,6 +1206,7 @@ version = "4.23.0"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "jsonschema-4.23.0-py3-none-any.whl", hash = "sha256:fbadb6f8b144a8f8cf9f0b89ba94501d143e50411a1278633f56a7acf7fd5566"},
     {file = "jsonschema-4.23.0.tar.gz", hash = "sha256:d71497fef26351a33265337fa77ffeb82423f3ea21283cd9467bb03999266bc4"},
@@ -1155,6 +1236,7 @@ version = "2024.10.1"
 description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "jsonschema_specifications-2024.10.1-py3-none-any.whl", hash = "sha256:a09a0680616357d9a0ecf05c12ad234479f549239d0f5b55f3deea67475da9bf"},
     {file = "jsonschema_specifications-2024.10.1.tar.gz", hash = "sha256:0f38b83639958ce1152d02a7f062902c41c8fd20d558b0c34344292d417ae272"},
@@ -1169,6 +1251,7 @@ version = "1.4.8"
 description = "A fast implementation of the Cassowary constraint solver"
 optional = false
 python-versions = ">=3.10"
+groups = ["dev"]
 files = [
     {file = "kiwisolver-1.4.8-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:88c6f252f6816a73b1f8c904f7bbe02fd67c09a69f7cb8a0eecdbf5ce78e63db"},
     {file = "kiwisolver-1.4.8-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:c72941acb7b67138f35b879bbe85be0f6c6a70cab78fe3ef6db9c024d9223e5b"},
@@ -1258,6 +1341,7 @@ version = "1.8.7"
 description = "Linked Open Data Modeling Language"
 optional = false
 python-versions = "<4.0.0,>=3.8.1"
+groups = ["main"]
 files = [
     {file = "linkml-1.8.7-py3-none-any.whl", hash = "sha256:5b06a279a3cdff0e652cb66c1f58d8e05059c7647b1718c2acc4339aa61fff90"},
     {file = "linkml-1.8.7.tar.gz", hash = "sha256:e5fb3e1019d416851e420ab155e4a4dedc9f16d3b336a27c988265067e1778fb"},
@@ -1292,9 +1376,9 @@ watchdog = ">=0.9.0"
 
 [package.extras]
 black = ["black (>=24.0.0)"]
-numpydantic = ["numpydantic (>=1.6.1)"]
+numpydantic = ["numpydantic (>=1.6.1) ; python_version >= \"3.9\""]
 shacl = ["pyshacl (>=0.25.0,<0.26.0)"]
-tests = ["black (>=24.0.0)", "numpydantic (>=1.6.1)", "pyshacl (>=0.25.0,<0.26.0)"]
+tests = ["black (>=24.0.0)", "numpydantic (>=1.6.1) ; python_version >= \"3.9\"", "pyshacl (>=0.25.0,<0.26.0)"]
 
 [[package]]
 name = "linkml-dataops"
@@ -1302,6 +1386,7 @@ version = "0.1.0"
 description = "LinkML Data Operations API"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "linkml_dataops-0.1.0-py3-none-any.whl", hash = "sha256:193cf7f659e5f07946d2c2761896910d5f7151d91282543b1363801f68307f4c"},
     {file = "linkml_dataops-0.1.0.tar.gz", hash = "sha256:4550eab65e78b70dc3b9c651724a94ac2b1d1edb2fbe576465f1d6951a54ed04"},
@@ -1320,6 +1405,7 @@ version = "1.9.1"
 description = "Runtime environment for LinkML, the Linked open data modeling language"
 optional = false
 python-versions = "<4.0.0,>=3.8.1"
+groups = ["main", "dev"]
 files = [
     {file = "linkml_runtime-1.9.1-py3-none-any.whl", hash = "sha256:0eb6db453f2de854512b4b83a8f137d703226a62363094537ae44e58184f0186"},
     {file = "linkml_runtime-1.9.1.tar.gz", hash = "sha256:cb98fa7d584f46a72277db579dc37099bcabc865747287560eedc766bf7b43d2"},
@@ -1347,6 +1433,7 @@ version = "3.8"
 description = "Python implementation of John Gruber's Markdown."
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "markdown-3.8-py3-none-any.whl", hash = "sha256:794a929b79c5af141ef5ab0f2f642d0f7b1872981250230e72682346f7cc90dc"},
     {file = "markdown-3.8.tar.gz", hash = "sha256:7df81e63f0df5c4b24b7d156eb81e4690595239b7d70937d0409f1b0de319c6f"},
@@ -1362,6 +1449,7 @@ version = "3.0.2"
 description = "Safely add untrusted strings to HTML/XML markup."
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "MarkupSafe-3.0.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:7e94c425039cde14257288fd61dcfb01963e658efbc0ff54f5306b06054700f8"},
     {file = "MarkupSafe-3.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:9e2d922824181480953426608b81967de705c3cef4d1af983af849d7bd619158"},
@@ -1432,6 +1520,7 @@ version = "3.10.1"
 description = "Python plotting package"
 optional = false
 python-versions = ">=3.10"
+groups = ["dev"]
 files = [
     {file = "matplotlib-3.10.1-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:ff2ae14910be903f4a24afdbb6d7d3a6c44da210fc7d42790b87aeac92238a16"},
     {file = "matplotlib-3.10.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:0721a3fd3d5756ed593220a8b86808a36c5031fce489adb5b31ee6dbb47dd5b2"},
@@ -1489,6 +1578,7 @@ version = "1.3.4"
 description = "A deep merge function for 🐍."
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "mergedeep-1.3.4-py3-none-any.whl", hash = "sha256:70775750742b25c0d8f36c55aed03d24c3384d17c951b3175d898bd778ef0307"},
     {file = "mergedeep-1.3.4.tar.gz", hash = "sha256:0096d52e9dad9939c3d975a774666af186eda617e6ca84df4c94dec30004f2a8"},
@@ -1500,6 +1590,7 @@ version = "1.6.1"
 description = "Project documentation with Markdown."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "mkdocs-1.6.1-py3-none-any.whl", hash = "sha256:db91759624d1647f3f34aa0c3f327dd2601beae39a366d6e064c03468d35c20e"},
     {file = "mkdocs-1.6.1.tar.gz", hash = "sha256:7b432f01d928c084353ab39c57282f29f92136665bdd6abf7c1ec8d822ef86f2"},
@@ -1522,7 +1613,7 @@ watchdog = ">=2.0"
 
 [package.extras]
 i18n = ["babel (>=2.9.0)"]
-min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.4)", "jinja2 (==2.11.1)", "markdown (==3.3.6)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "mkdocs-get-deps (==0.2.0)", "packaging (==20.5)", "pathspec (==0.11.1)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "watchdog (==2.0)"]
+min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4) ; platform_system == \"Windows\"", "ghp-import (==1.0)", "importlib-metadata (==4.4) ; python_version < \"3.10\"", "jinja2 (==2.11.1)", "markdown (==3.3.6)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "mkdocs-get-deps (==0.2.0)", "packaging (==20.5)", "pathspec (==0.11.1)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "watchdog (==2.0)"]
 
 [[package]]
 name = "mkdocs-get-deps"
@@ -1530,6 +1621,7 @@ version = "0.2.0"
 description = "MkDocs extension that lists all dependencies according to a mkdocs.yml file"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "mkdocs_get_deps-0.2.0-py3-none-any.whl", hash = "sha256:2bf11d0b133e77a0dd036abeeb06dec8775e46efa526dc70667d8863eefc6134"},
     {file = "mkdocs_get_deps-0.2.0.tar.gz", hash = "sha256:162b3d129c7fad9b19abfdcb9c1458a651628e4b1dea628ac68790fb3061c60c"},
@@ -1546,6 +1638,7 @@ version = "9.6.12"
 description = "Documentation that simply works"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "mkdocs_material-9.6.12-py3-none-any.whl", hash = "sha256:92b4fbdc329e4febc267ca6e2c51e8501fa97b2225c5f4deb4d4e43550f8e61e"},
     {file = "mkdocs_material-9.6.12.tar.gz", hash = "sha256:add6a6337b29f9ea7912cb1efc661de2c369060b040eb5119855d794ea85b473"},
@@ -1575,6 +1668,7 @@ version = "1.3.1"
 description = "Extension pack for Python Markdown and MkDocs Material."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "mkdocs_material_extensions-1.3.1-py3-none-any.whl", hash = "sha256:adff8b62700b25cb77b53358dad940f3ef973dd6db797907c49e3c2ef3ab4e31"},
     {file = "mkdocs_material_extensions-1.3.1.tar.gz", hash = "sha256:10c9511cea88f568257f960358a467d12b970e1f7b2c0e5fb2bb48cab1928443"},
@@ -1586,6 +1680,7 @@ version = "0.6.0"
 description = "A MkDocs plugin for including mermaid graphs in markdown sources"
 optional = false
 python-versions = ">=3.5"
+groups = ["main"]
 files = [
     {file = "mkdocs-mermaid2-plugin-0.6.0.tar.gz", hash = "sha256:99cca6db7c6b4a954a701dcb6b507191bc32a7b0b47eacf2885c1bacf77d1af1"},
     {file = "mkdocs_mermaid2_plugin-0.6.0-py3-none-any.whl", hash = "sha256:ffbe8a7daa7ed718cb800c44c5ce4c0ff413caebf7b8b63d9c4a998dfd78a64d"},
@@ -1607,6 +1702,7 @@ version = "1.2.2"
 description = "A MkDocs plugin for dynamic page redirects to prevent broken links"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "mkdocs_redirects-1.2.2-py3-none-any.whl", hash = "sha256:7dbfa5647b79a3589da4401403d69494bd1f4ad03b9c15136720367e1f340ed5"},
     {file = "mkdocs_redirects-1.2.2.tar.gz", hash = "sha256:3094981b42ffab29313c2c1b8ac3969861109f58b2dd58c45fc81cd44bfa0095"},
@@ -1621,6 +1717,7 @@ version = "0.1.2"
 description = "More click."
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "more_click-0.1.2-py3-none-any.whl", hash = "sha256:f6387af37ef7e7423bd94b72a81a53c79c5086a3bfe5cc035da534ff0c2a0a9e"},
     {file = "more_click-0.1.2.tar.gz", hash = "sha256:085da66d5a9b823c5d912a888dca1fa0c8b3a14ed1b21ea9c8a1b814857a3981"},
@@ -1638,6 +1735,7 @@ version = "10.6.0"
 description = "More routines for operating on iterables, beyond itertools"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "more-itertools-10.6.0.tar.gz", hash = "sha256:2cd7fad1009c31cc9fb6a035108509e6547547a7a738374f10bd49a09eb3ee3b"},
     {file = "more_itertools-10.6.0-py3-none-any.whl", hash = "sha256:6eb054cb4b6db1473f6e15fcc676a08e4732548acd47c708f0e179c2c7c01e89"},
@@ -1649,6 +1747,7 @@ version = "1.0.0"
 description = "Type system extensions for programs checked with the mypy type checker."
 optional = false
 python-versions = ">=3.5"
+groups = ["dev"]
 files = [
     {file = "mypy_extensions-1.0.0-py3-none-any.whl", hash = "sha256:4392f6c0eb8a5668a69e23d168ffa70f0be9ccfd32b5cc2d26a34ae5b844552d"},
     {file = "mypy_extensions-1.0.0.tar.gz", hash = "sha256:75dbf8955dc00442a438fc4d0666508a9a97b6bd41aa2f0ffe9d2f2725af0782"},
@@ -1660,6 +1759,7 @@ version = "3.9.1"
 description = "Natural Language Toolkit"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "nltk-3.9.1-py3-none-any.whl", hash = "sha256:4fa26829c5b00715afe3061398a8989dc643b92ce7dd93fb4585a70930d168a1"},
     {file = "nltk-3.9.1.tar.gz", hash = "sha256:87d127bd3de4bd89a4f81265e5fa59cb1b199b27440175370f7417d2bc7ae868"},
@@ -1685,6 +1785,7 @@ version = "11.3.0"
 description = "Schema resources for the National Microbiome Data Collaborative (NMDC)"
 optional = false
 python-versions = "<4.0,>=3.9"
+groups = ["main"]
 files = [
     {file = "nmdc_schema-11.3.0-py3-none-any.whl", hash = "sha256:94815b7b375e0960407db8a214f57a1e99c3312d97685e023878c89c0be66f8c"},
     {file = "nmdc_schema-11.3.0.tar.gz", hash = "sha256:c58b29ff4482857dba6ffc991d67bec12e4eaa3a49f86215c87b480f9aca2477"},
@@ -1708,6 +1809,7 @@ version = "0.5.14"
 description = "Modules to convert numbers to words. Easily extensible."
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "num2words-0.5.14-py3-none-any.whl", hash = "sha256:1c8e5b00142fc2966fd8d685001e36c4a9911e070d1b120e1beb721fa1edb33d"},
     {file = "num2words-0.5.14.tar.gz", hash = "sha256:b066ec18e56b6616a3b38086b5747daafbaa8868b226a36127e0451c0cf379c6"},
@@ -1722,6 +1824,7 @@ version = "2.2.5"
 description = "Fundamental package for array computing in Python"
 optional = false
 python-versions = ">=3.10"
+groups = ["main", "dev"]
 files = [
     {file = "numpy-2.2.5-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:1f4a922da1729f4c40932b2af4fe84909c7a6e167e6e99f71838ce3a29f3fe26"},
     {file = "numpy-2.2.5-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:b6f91524d31b34f4a5fee24f5bc16dcd1491b668798b6d85585d836c1e633a6a"},
@@ -1786,6 +1889,7 @@ version = "3.1.5"
 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "openpyxl-3.1.5-py2.py3-none-any.whl", hash = "sha256:5282c12b107bffeef825f4617dc029afaf41d0ea60823bbb665ef3079dc79de2"},
     {file = "openpyxl-3.1.5.tar.gz", hash = "sha256:cf0e3cf56142039133628b5acffe8ef0c12bc902d2aadd3e0fe5878dc08d1050"},
@@ -1794,12 +1898,25 @@ files = [
 [package.dependencies]
 et-xmlfile = "*"
 
+[[package]]
+name = "orderly-set"
+version = "5.4.0"
+description = "Orderly set"
+optional = false
+python-versions = ">=3.8"
+groups = ["main"]
+files = [
+    {file = "orderly_set-5.4.0-py3-none-any.whl", hash = "sha256:f0192a7f9ae3385b587b71688353fae491d1ca45878496eb71ea118be1623639"},
+    {file = "orderly_set-5.4.0.tar.gz", hash = "sha256:c8ff5ba824abe4eebcbbdd3f646ff3648ad0dd52239319d90056d8d30b6cccdd"},
+]
+
 [[package]]
 name = "packaging"
 version = "25.0"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "packaging-25.0-py3-none-any.whl", hash = "sha256:29572ef2b1f17581046b3a2227d5c611fb25ec70ca1ba8554b24b0e69331a484"},
     {file = "packaging-25.0.tar.gz", hash = "sha256:d443872c98d677bf60f6a1f2f8c1cb748e8fe762d2bf9d3148b5599295b0fc4f"},
@@ -1811,6 +1928,7 @@ version = "0.5.7"
 description = "Divides large result sets into pages for easier browsing"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "paginate-0.5.7-py2.py3-none-any.whl", hash = "sha256:b885e2af73abcf01d9559fd5216b57ef722f8c42affbb63942377668e35c7591"},
     {file = "paginate-0.5.7.tar.gz", hash = "sha256:22bd083ab41e1a8b4f3690544afb2c60c25e5c9a63a30fa2f483f6c60c8e5945"},
@@ -1826,6 +1944,7 @@ version = "2.2.3"
 description = "Powerful data structures for data analysis, time series, and statistics"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "pandas-2.2.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:1948ddde24197a0f7add2bdc4ca83bf2b1ef84a1bc8ccffd95eda17fd836ecb5"},
     {file = "pandas-2.2.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:381175499d3802cde0eabbaf6324cce0c4f5d52ca6f8c377c29ad442f50f6348"},
@@ -1912,6 +2031,7 @@ version = "1.20.2"
 description = "parse() is the opposite of format()"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "parse-1.20.2-py2.py3-none-any.whl", hash = "sha256:967095588cb802add9177d0c0b6133b5ba33b1ea9007ca800e526f42a85af558"},
     {file = "parse-1.20.2.tar.gz", hash = "sha256:b41d604d16503c79d81af5165155c0b20f6c8d6c559efa66b4b695c3e5a0a0ce"},
@@ -1923,6 +2043,7 @@ version = "0.12.1"
 description = "Utility library for gitignore style pattern matching of file paths."
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "pathspec-0.12.1-py3-none-any.whl", hash = "sha256:a0d503e138a4c123b27490a4f7beda6a01c6f288df0e4a8b79c7eb0dc7b4cc08"},
     {file = "pathspec-0.12.1.tar.gz", hash = "sha256:a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712"},
@@ -1934,6 +2055,7 @@ version = "11.2.1"
 description = "Python Imaging Library (Fork)"
 optional = false
 python-versions = ">=3.9"
+groups = ["dev"]
 files = [
     {file = "pillow-11.2.1-cp310-cp310-macosx_10_10_x86_64.whl", hash = "sha256:d57a75d53922fc20c165016a20d9c44f73305e67c351bbc60d1adaf662e74047"},
     {file = "pillow-11.2.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:127bf6ac4a5b58b3d32fc8289656f77f80567d65660bc46f72c0d77e6600cc95"},
@@ -2024,7 +2146,7 @@ fpx = ["olefile"]
 mic = ["olefile"]
 test-arrow = ["pyarrow"]
 tests = ["check-manifest", "coverage (>=7.4.2)", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout", "trove-classifiers (>=2024.10.12)"]
-typing = ["typing-extensions"]
+typing = ["typing-extensions ; python_version < \"3.10\""]
 xmp = ["defusedxml"]
 
 [[package]]
@@ -2033,6 +2155,7 @@ version = "4.3.7"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "platformdirs-4.3.7-py3-none-any.whl", hash = "sha256:a03875334331946f13c549dbd8f4bac7a13a50a895a0eb1e8c6a8ace80d40a94"},
     {file = "platformdirs-4.3.7.tar.gz", hash = "sha256:eb437d586b6a0986388f0d6f74aa0cde27b48d0e3d66843640bfb6bdcdb6e351"},
@@ -2049,6 +2172,7 @@ version = "1.5.0"
 description = "plugin and hook calling mechanisms for python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
     {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
@@ -2064,6 +2188,7 @@ version = "3.11"
 description = "Python Lex & Yacc"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "ply-3.11-py2.py3-none-any.whl", hash = "sha256:096f9b8350b65ebd2fd1346b12452efe5b9607f7482813ffca50c22722a807ce"},
     {file = "ply-3.11.tar.gz", hash = "sha256:00c7c1aaa88358b9c765b6d3000c6eec0ba42abca5351b095321aef446081da3"},
@@ -2075,6 +2200,7 @@ version = "0.1.12"
 description = "A python API for working with ID prefixes"
 optional = false
 python-versions = ">=3.7,<4.0"
+groups = ["main", "dev"]
 files = [
     {file = "prefixcommons-0.1.12-py3-none-any.whl", hash = "sha256:16dbc0a1f775e003c724f19a694fcfa3174608f5c8b0e893d494cf8098ac7f8b"},
     {file = "prefixcommons-0.1.12.tar.gz", hash = "sha256:22c4e2d37b63487b3ab48f0495b70f14564cb346a15220f23919eb0c1851f69f"},
@@ -2092,6 +2218,7 @@ version = "0.2.6"
 description = "A python library for retrieving semantic prefix maps"
 optional = false
 python-versions = "<4.0,>=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "prefixmaps-0.2.6-py3-none-any.whl", hash = "sha256:f6cef28a7320fc6337cf411be212948ce570333a0ce958940ef684c7fb192a62"},
     {file = "prefixmaps-0.2.6.tar.gz", hash = "sha256:7421e1244eea610217fa1ba96c9aebd64e8162a930dc0626207cd8bf62ecf4b9"},
@@ -2107,6 +2234,7 @@ version = "2.13.0"
 description = "Python style guide checker"
 optional = false
 python-versions = ">=3.9"
+groups = ["dev"]
 files = [
     {file = "pycodestyle-2.13.0-py2.py3-none-any.whl", hash = "sha256:35863c5974a271c7a726ed228a14a4f6daf49df369d8c50cd9a6f58a5e143ba9"},
     {file = "pycodestyle-2.13.0.tar.gz", hash = "sha256:c8415bf09abe81d9c7f872502a6eee881fbe85d8763dd5b9924bb0a01d67efae"},
@@ -2118,6 +2246,7 @@ version = "2.11.3"
 description = "Data validation using Python type hints"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "pydantic-2.11.3-py3-none-any.whl", hash = "sha256:a082753436a07f9ba1289c6ffa01cd93db3548776088aa917cc43b63f68fa60f"},
     {file = "pydantic-2.11.3.tar.gz", hash = "sha256:7471657138c16adad9322fe3070c0116dd6c3ad8d649300e3cbdfe91f4db4ec3"},
@@ -2131,7 +2260,7 @@ typing-inspection = ">=0.4.0"
 
 [package.extras]
 email = ["email-validator (>=2.0.0)"]
-timezone = ["tzdata"]
+timezone = ["tzdata ; python_version >= \"3.9\" and platform_system == \"Windows\""]
 
 [[package]]
 name = "pydantic-core"
@@ -2139,6 +2268,7 @@ version = "2.33.1"
 description = "Core functionality for Pydantic validation and serialization"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "pydantic_core-2.33.1-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:3077cfdb6125cc8dab61b155fdd714663e401f0e6883f9632118ec12cf42df26"},
     {file = "pydantic_core-2.33.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:8ffab8b2908d152e74862d276cf5017c81a2f3719f14e8e3e8d6b83fda863927"},
@@ -2250,6 +2380,7 @@ version = "2.19.1"
 description = "Pygments is a syntax highlighting package written in Python."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "pygments-2.19.1-py3-none-any.whl", hash = "sha256:9ea1544ad55cecf4b8242fab6dd35a93bbce657034b0611ee383099054ab6d8c"},
     {file = "pygments-2.19.1.tar.gz", hash = "sha256:61c16d2a8576dc0649d9f39e089b5f02bcd27fba10d8fb4dcc28173f7a45151f"},
@@ -2264,6 +2395,7 @@ version = "0.11.10"
 description = "Python JSON Schema Grammar interpreter"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "PyJSG-0.11.10-py3-none-any.whl", hash = "sha256:10af60ff42219be7e85bf7f11c19b648715b0b29eb2ddbd269e87069a7c3f26d"},
     {file = "PyJSG-0.11.10.tar.gz", hash = "sha256:4bd6e3ff2833fa2b395bbe803a2d72a5f0bab5b7285bccd0da1a1bc0aee88bfa"},
@@ -2279,6 +2411,7 @@ version = "10.14.3"
 description = "Extension pack for Python Markdown."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "pymdown_extensions-10.14.3-py3-none-any.whl", hash = "sha256:05e0bee73d64b9c71a4ae17c72abc2f700e8bc8403755a00580b49a4e9f189e9"},
     {file = "pymdown_extensions-10.14.3.tar.gz", hash = "sha256:41e576ce3f5d650be59e900e4ceff231e0aed2a88cf30acaee41e02f063a061b"},
@@ -2297,6 +2430,7 @@ version = "4.12.0"
 description = "Python driver for MongoDB <http://www.mongodb.org>"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pymongo-4.12.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e23d9b5e8d2dfc3ac0540966e93008e471345ec9a2797b77be551e64b70fc8ee"},
     {file = "pymongo-4.12.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:ecf325f31bf8be70ec5cab50b45a8e09acf3952d693215acac965cecaeb6b58d"},
@@ -2363,9 +2497,9 @@ dnspython = ">=1.16.0,<3.0.0"
 [package.extras]
 aws = ["pymongo-auth-aws (>=1.1.0,<2.0.0)"]
 docs = ["furo (==2024.8.6)", "readthedocs-sphinx-search (>=0.3,<1.0)", "sphinx (>=5.3,<9)", "sphinx-autobuild (>=2020.9.1)", "sphinx-rtd-theme (>=2,<4)", "sphinxcontrib-shellcheck (>=1,<2)"]
-encryption = ["certifi", "pymongo-auth-aws (>=1.1.0,<2.0.0)", "pymongocrypt (>=1.13.0,<2.0.0)"]
-gssapi = ["pykerberos", "winkerberos (>=0.5.0)"]
-ocsp = ["certifi", "cryptography (>=2.5)", "pyopenssl (>=17.2.0)", "requests (<3.0.0)", "service-identity (>=18.1.0)"]
+encryption = ["certifi ; os_name == \"nt\" or sys_platform == \"darwin\"", "pymongo-auth-aws (>=1.1.0,<2.0.0)", "pymongocrypt (>=1.13.0,<2.0.0)"]
+gssapi = ["pykerberos ; os_name != \"nt\"", "winkerberos (>=0.5.0) ; os_name == \"nt\""]
+ocsp = ["certifi ; os_name == \"nt\" or sys_platform == \"darwin\"", "cryptography (>=2.5)", "pyopenssl (>=17.2.0)", "requests (<3.0.0)", "service-identity (>=18.1.0)"]
 snappy = ["python-snappy"]
 test = ["pytest (>=8.2)", "pytest-asyncio (>=0.24.0)"]
 zstd = ["zstandard"]
@@ -2376,6 +2510,7 @@ version = "3.2.3"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "pyparsing-3.2.3-py3-none-any.whl", hash = "sha256:a749938e02d6fd0b59b356ca504a24982314bb090c383e3cf201c95ef7e2bfcf"},
     {file = "pyparsing-3.2.3.tar.gz", hash = "sha256:b9c13f1ab8b3b542f72e28f634bad4de758ab3ce4546e4301970ad6fa77c38be"},
@@ -2390,6 +2525,7 @@ version = "1.9.0"
 description = "API to interact with the python pyproject.toml based projects"
 optional = false
 python-versions = ">=3.9"
+groups = ["dev"]
 files = [
     {file = "pyproject_api-1.9.0-py3-none-any.whl", hash = "sha256:326df9d68dea22d9d98b5243c46e3ca3161b07a1b9b18e213d1e24fd0e605766"},
     {file = "pyproject_api-1.9.0.tar.gz", hash = "sha256:7e8a9854b2dfb49454fae421cb86af43efbb2b2454e5646ffb7623540321ae6e"},
@@ -2409,6 +2545,7 @@ version = "0.8.1"
 description = "Python ShEx Implementation"
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "PyShEx-0.8.1-py3-none-any.whl", hash = "sha256:6da1b10123e191abf8dcb6bf3e54aa3e1fcf771df5d1a0ed453217c8900c8e6a"},
     {file = "PyShEx-0.8.1.tar.gz", hash = "sha256:3c5c4d45fe27faaadae803cb008c41acf8ee784da7868b04fd84967e75be70d0"},
@@ -2431,6 +2568,7 @@ version = "0.9.1"
 description = "PyShExC - Python ShEx compiler"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "PyShExC-0.9.1-py2.py3-none-any.whl", hash = "sha256:efc55ed5cb2453e9df569b03e282505e96bb06597934288f3b23dd980ef10028"},
     {file = "PyShExC-0.9.1.tar.gz", hash = "sha256:35a9975d4b9afeb20ef710fb6680871756381d0c39fbb5470b3b506581a304d3"},
@@ -2450,6 +2588,7 @@ version = "0.7.0"
 description = "Easily pick a place to store data for your Python code"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pystow-0.7.0-py3-none-any.whl", hash = "sha256:5b6ed4b322a625f0163471f76989bae3b870fd20d64fed55a9150c68d34eb39d"},
     {file = "pystow-0.7.0.tar.gz", hash = "sha256:5f8935a76d5f03b0645bedbe5dfcb3b777a0e755fda3e3fd3e4be7a1d2d058d0"},
@@ -2475,6 +2614,7 @@ version = "8.3.5"
 description = "pytest: simple powerful testing with Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "pytest-8.3.5-py3-none-any.whl", hash = "sha256:c69214aa47deac29fad6c2a4f590b9c4a9fdb16a403176fe154b79c0b4d4d820"},
     {file = "pytest-8.3.5.tar.gz", hash = "sha256:f4efe70cc14e511565ac476b57c279e12a855b11f48f212af1080ef2263d3845"},
@@ -2497,6 +2637,7 @@ version = "2015.11.4"
 description = "Configures logging and allows tweaking the log level with a py.test flag"
 optional = false
 python-versions = "*"
+groups = ["main", "dev"]
 files = [
     {file = "pytest-logging-2015.11.4.tar.gz", hash = "sha256:cec5c85ecf18aab7b2ead5498a31b9f758680ef5a902b9054ab3f2bdbb77c896"},
 ]
@@ -2510,6 +2651,7 @@ version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+groups = ["main", "dev"]
 files = [
     {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"},
     {file = "python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"},
@@ -2524,6 +2666,7 @@ version = "1.1.0"
 description = "Read key-value pairs from a .env file and set them as environment variables"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "python_dotenv-1.1.0-py3-none-any.whl", hash = "sha256:d7c01d9e2293916c18baf562d95698754b0dbbb5e74d457c45d4f6561fb9d55d"},
     {file = "python_dotenv-1.1.0.tar.gz", hash = "sha256:41f90bc6f5f177fb41f53e87666db362025010eb28f60a01c9143bfa33a2b2d5"},
@@ -2538,6 +2681,7 @@ version = "0.4.0"
 description = "A pure Python implementation of the trie data structure."
 optional = false
 python-versions = "*"
+groups = ["main", "dev"]
 files = [
     {file = "PyTrie-0.4.0-py3-none-any.whl", hash = "sha256:f687c224ee8c66cda8e8628a903011b692635ffbb08d4b39c5f92b18eb78c950"},
     {file = "PyTrie-0.4.0.tar.gz", hash = "sha256:8f4488f402d3465993fb6b6efa09866849ed8cda7903b50647b7d0342b805379"},
@@ -2552,6 +2696,7 @@ version = "2025.2"
 description = "World timezone definitions, modern and historical"
 optional = false
 python-versions = "*"
+groups = ["main", "dev"]
 files = [
     {file = "pytz-2025.2-py2.py3-none-any.whl", hash = "sha256:5ddf76296dd8c44c26eb8f4b6f35488f3ccbf6fbbd7adee0b7262d43f0ec2f00"},
     {file = "pytz-2025.2.tar.gz", hash = "sha256:360b9e3dbb49a209c21ad61809c7fb453643e048b38924c765813546746e81c3"},
@@ -2563,6 +2708,7 @@ version = "6.0.2"
 description = "YAML parser and emitter for Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "PyYAML-6.0.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0a9a2848a5b7feac301353437eb7d5957887edbf81d56e903999a75a3d743086"},
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@@ -2625,6 +2771,7 @@ version = "0.1"
 description = "A custom YAML tag for referencing environment variables in YAML files. "
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "pyyaml_env_tag-0.1-py3-none-any.whl", hash = "sha256:af31106dec8a4d68c60207c1886031cbf839b68aa7abccdb19868200532c2069"},
     {file = "pyyaml_env_tag-0.1.tar.gz", hash = "sha256:70092675bda14fdec33b31ba77e7543de9ddc88f2e5b99160396572d11525bdb"},
@@ -2639,6 +2786,7 @@ version = "0.9.2"
 description = "Extract quantities from unstructured text."
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "quantulum3-0.9.2-py3-none-any.whl", hash = "sha256:bc56c2ee9c96a391b1660d0134d401515e6ea676cbd1a05d8e75195917216077"},
     {file = "quantulum3-0.9.2.tar.gz", hash = "sha256:797b5d94c52d23107010838fbf2d3bb4f15630f4e90556401bdb042a1c12fc1e"},
@@ -2663,6 +2811,7 @@ version = "7.1.4"
 description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
 optional = false
 python-versions = "<4.0.0,>=3.8.1"
+groups = ["main", "dev"]
 files = [
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@@ -2685,6 +2834,7 @@ version = "0.6.1"
 description = "rdflib extension adding JSON-LD parser and serializer"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "rdflib-jsonld-0.6.1.tar.gz", hash = "sha256:eda5a42a2e09f80d4da78e32b5c684bccdf275368f1541e6b7bcddfb1382a0e0"},
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@@ -2699,6 +2849,7 @@ version = "1.0.3"
 description = "Shim for rdflib 5 and 6 incompatibilities"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "rdflib_shim-1.0.3-py3-none-any.whl", hash = "sha256:7a853e7750ef1e9bf4e35dea27d54e02d4ed087de5a9e0c329c4a6d82d647081"},
     {file = "rdflib_shim-1.0.3.tar.gz", hash = "sha256:d955d11e2986aab42b6830ca56ac6bc9c893abd1d049a161c6de2f1b99d4fc0d"},
@@ -2714,6 +2865,7 @@ version = "0.7.1"
 description = "A docutils-compatibility bridge to CommonMark, enabling you to write CommonMark inside of Docutils & Sphinx projects."
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "recommonmark-0.7.1-py2.py3-none-any.whl", hash = "sha256:1b1db69af0231efce3fa21b94ff627ea33dee7079a01dd0a7f8482c3da148b3f"},
     {file = "recommonmark-0.7.1.tar.gz", hash = "sha256:bdb4db649f2222dcd8d2d844f0006b958d627f732415d399791ee436a3686d67"},
@@ -2730,6 +2882,7 @@ version = "0.36.2"
 description = "JSON Referencing + Python"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "referencing-0.36.2-py3-none-any.whl", hash = "sha256:e8699adbbf8b5c7de96d8ffa0eb5c158b3beafce084968e2ea8bb08c6794dcd0"},
     {file = "referencing-0.36.2.tar.gz", hash = "sha256:df2e89862cd09deabbdba16944cc3f10feb6b3e6f18e902f7cc25609a34775aa"},
@@ -2746,6 +2899,7 @@ version = "2024.11.6"
 description = "Alternative regular expression module, to replace re."
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "regex-2024.11.6-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:ff590880083d60acc0433f9c3f713c51f7ac6ebb9adf889c79a261ecf541aa91"},
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@@ -2849,6 +3003,7 @@ version = "2.32.3"
 description = "Python HTTP for Humans."
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "requests-2.32.3-py3-none-any.whl", hash = "sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6"},
     {file = "requests-2.32.3.tar.gz", hash = "sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760"},
@@ -2870,6 +3025,7 @@ version = "0.11.0"
 description = "This is a small Python module for parsing Pip requirement files."
 optional = false
 python-versions = "<4.0,>=3.8"
+groups = ["dev"]
 files = [
     {file = "requirements_parser-0.11.0-py3-none-any.whl", hash = "sha256:50379eb50311834386c2568263ae5225d7b9d0867fb55cf4ecc93959de2c2684"},
     {file = "requirements_parser-0.11.0.tar.gz", hash = "sha256:35f36dc969d14830bf459803da84f314dc3d17c802592e9e970f63d0359e5920"},
@@ -2885,6 +3041,7 @@ version = "0.1.4"
 description = "A pure python RFC3339 validator"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+groups = ["main"]
 files = [
     {file = "rfc3339_validator-0.1.4-py2.py3-none-any.whl", hash = "sha256:24f6ec1eda14ef823da9e36ec7113124b39c04d50a4d3d3a3c2859577e7791fa"},
     {file = "rfc3339_validator-0.1.4.tar.gz", hash = "sha256:138a2abdf93304ad60530167e51d2dfb9549521a836871b88d7f4695d0022f6b"},
@@ -2899,6 +3056,7 @@ version = "1.3.8"
 description = "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "rfc3987-1.3.8-py2.py3-none-any.whl", hash = "sha256:10702b1e51e5658843460b189b185c0366d2cf4cff716f13111b0ea9fd2dce53"},
     {file = "rfc3987-1.3.8.tar.gz", hash = "sha256:d3c4d257a560d544e9826b38bc81db676890c79ab9d7ac92b39c7a253d5ca733"},
@@ -2910,6 +3068,7 @@ version = "0.24.0"
 description = "Python bindings to Rust's persistent data structures (rpds)"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "rpds_py-0.24.0-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:006f4342fe729a368c6df36578d7a348c7c716be1da0a1a0f86e3021f8e98724"},
     {file = "rpds_py-0.24.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:2d53747da70a4e4b17f559569d5f9506420966083a31c5fbd84e764461c4444b"},
@@ -3033,6 +3192,7 @@ version = "0.18.10"
 description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "ruamel.yaml-0.18.10-py3-none-any.whl", hash = "sha256:30f22513ab2301b3d2b577adc121c6471f28734d3d9728581245f1e76468b4f1"},
     {file = "ruamel.yaml-0.18.10.tar.gz", hash = "sha256:20c86ab29ac2153f80a428e1254a8adf686d3383df04490514ca3b79a362db58"},
@@ -3051,6 +3211,8 @@ version = "0.2.12"
 description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
+markers = "platform_python_implementation == \"CPython\" and python_version < \"3.13\""
 files = [
     {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-macosx_13_0_arm64.whl", hash = "sha256:11f891336688faf5156a36293a9c362bdc7c88f03a8a027c2c1d8e0bcde998e5"},
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@@ -3058,6 +3220,7 @@ files = [
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+    {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-musllinux_1_2_aarch64.whl", hash = "sha256:a52d48f4e7bf9005e8f0a89209bf9a73f7190ddf0489eee5eb51377385f59f2a"},
     {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-win32.whl", hash = "sha256:3eac5a91891ceb88138c113f9db04f3cebdae277f5d44eaa3651a4f573e6a5da"},
     {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-win_amd64.whl", hash = "sha256:ab007f2f5a87bd08ab1499bdf96f3d5c6ad4dcfa364884cb4549aa0154b13a28"},
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@@ -3066,6 +3229,7 @@ files = [
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+    {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-musllinux_1_2_aarch64.whl", hash = "sha256:1492a6051dab8d912fc2adeef0e8c72216b24d57bd896ea607cb90bb0c4981d3"},
     {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-win32.whl", hash = "sha256:bd0a08f0bab19093c54e18a14a10b4322e1eacc5217056f3c063bd2f59853ce4"},
     {file = "ruamel.yaml.clib-0.2.12-cp311-cp311-win_amd64.whl", hash = "sha256:a274fb2cb086c7a3dea4322ec27f4cb5cc4b6298adb583ab0e211a4682f241eb"},
     {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-macosx_14_0_arm64.whl", hash = "sha256:20b0f8dc160ba83b6dcc0e256846e1a02d044e13f7ea74a3d1d56ede4e48c632"},
@@ -3074,6 +3238,7 @@ files = [
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+    {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-musllinux_1_2_aarch64.whl", hash = "sha256:b82a7c94a498853aa0b272fd5bc67f29008da798d4f93a2f9f289feb8426a58d"},
     {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-win32.whl", hash = "sha256:e8c4ebfcfd57177b572e2040777b8abc537cdef58a2120e830124946aa9b42c5"},
     {file = "ruamel.yaml.clib-0.2.12-cp312-cp312-win_amd64.whl", hash = "sha256:0467c5965282c62203273b838ae77c0d29d7638c8a4e3a1c8bdd3602c10904e4"},
     {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-macosx_14_0_arm64.whl", hash = "sha256:4c8c5d82f50bb53986a5e02d1b3092b03622c02c2eb78e29bec33fd9593bae1a"},
@@ -3082,6 +3247,7 @@ files = [
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+    {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-musllinux_1_2_aarch64.whl", hash = "sha256:4f6f3eac23941b32afccc23081e1f50612bdbe4e982012ef4f5797986828cd01"},
     {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-win32.whl", hash = "sha256:6442cb36270b3afb1b4951f060eccca1ce49f3d087ca1ca4563a6eb479cb3de6"},
     {file = "ruamel.yaml.clib-0.2.12-cp313-cp313-win_amd64.whl", hash = "sha256:e5b8daf27af0b90da7bb903a876477a9e6d7270be6146906b276605997c7e9a3"},
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@@ -3090,6 +3256,7 @@ files = [
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+    {file = "ruamel.yaml.clib-0.2.12-cp39-cp39-musllinux_1_2_aarch64.whl", hash = "sha256:2c59aa6170b990d8d2719323e628aaf36f3bfbc1c26279c0eeeb24d05d2d11c7"},
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@@ -3101,6 +3268,7 @@ version = "1.6.1"
 description = "A set of python modules for machine learning and data mining"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "scikit_learn-1.6.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:d056391530ccd1e501056160e3c9673b4da4805eb67eb2bdf4e983e1f9c9204e"},
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@@ -3155,6 +3323,7 @@ version = "1.15.2"
 description = "Fundamental algorithms for scientific computing in Python"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "scipy-1.15.2-cp310-cp310-macosx_10_13_x86_64.whl", hash = "sha256:a2ec871edaa863e8213ea5df811cd600734f6400b4af272e1c011e69401218e9"},
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@@ -3210,7 +3379,7 @@ numpy = ">=1.23.5,<2.5"
 [package.extras]
 dev = ["cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy (==1.10.0)", "pycodestyle", "pydevtool", "rich-click", "ruff (>=0.0.292)", "types-psutil", "typing_extensions"]
 doc = ["intersphinx_registry", "jupyterlite-pyodide-kernel", "jupyterlite-sphinx (>=0.16.5)", "jupytext", "matplotlib (>=3.5)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (>=0.15.2)", "sphinx (>=5.0.0,<8.0.0)", "sphinx-copybutton", "sphinx-design (>=0.4.0)"]
-test = ["Cython", "array-api-strict (>=2.0,<2.1.1)", "asv", "gmpy2", "hypothesis (>=6.30)", "meson", "mpmath", "ninja", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
+test = ["Cython", "array-api-strict (>=2.0,<2.1.1)", "asv", "gmpy2", "hypothesis (>=6.30)", "meson", "mpmath", "ninja ; sys_platform != \"emscripten\"", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
 
 [[package]]
 name = "seaborn"
@@ -3218,6 +3387,7 @@ version = "0.13.2"
 description = "Statistical data visualization"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "seaborn-0.13.2-py3-none-any.whl", hash = "sha256:636f8336facf092165e27924f223d3c62ca560b1f2bb5dff7ab7fad265361987"},
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@@ -3239,19 +3409,20 @@ version = "79.0.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "setuptools-79.0.0-py3-none-any.whl", hash = "sha256:b9ab3a104bedb292323f53797b00864e10e434a3ab3906813a7169e4745b912a"},
     {file = "setuptools-79.0.0.tar.gz", hash = "sha256:9828422e7541213b0aacb6e10bbf9dd8febeaa45a48570e09b6d100e063fc9f9"},
 ]
 
 [package.extras]
-check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)", "ruff (>=0.8.0)"]
-core = ["importlib_metadata (>=6)", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1)", "wheel (>=0.43.0)"]
+check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1) ; sys_platform != \"cygwin\"", "ruff (>=0.8.0) ; sys_platform != \"cygwin\""]
+core = ["importlib_metadata (>=6) ; python_version < \"3.10\"", "jaraco.functools (>=4)", "jaraco.text (>=3.7)", "more_itertools", "more_itertools (>=8.8)", "packaging (>=24.2)", "platformdirs (>=4.2.2)", "tomli (>=2.0.1) ; python_version < \"3.11\"", "wheel (>=0.43.0)"]
 cover = ["pytest-cov"]
 doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
 enabler = ["pytest-enabler (>=2.2)"]
-test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.7.2)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"]
-type = ["importlib_metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (==1.14.*)", "pytest-mypy"]
+test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21) ; python_version >= \"3.9\" and sys_platform != \"cygwin\"", "jaraco.envs (>=2.2)", "jaraco.path (>=3.7.2)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf ; sys_platform != \"cygwin\"", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"]
+type = ["importlib_metadata (>=7.0.2) ; python_version < \"3.10\"", "jaraco.develop (>=7.21) ; sys_platform != \"cygwin\"", "mypy (==1.14.*)", "pytest-mypy"]
 
 [[package]]
 name = "shexjsg"
@@ -3259,6 +3430,7 @@ version = "0.8.2"
 description = "ShExJSG - Astract Syntax Tree for the ShEx 2.0 language"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "ShExJSG-0.8.2-py2.py3-none-any.whl", hash = "sha256:3b0d8432dd313bee9e1343382c5e02e9908dd941a7dd7342bf8c0200fe523766"},
     {file = "ShExJSG-0.8.2.tar.gz", hash = "sha256:f17a629fc577fa344382bdee143cd9ff86588537f9f811f66cea6f63cdbcd0b6"},
@@ -3273,6 +3445,7 @@ version = "1.17.0"
 description = "Python 2 and 3 compatibility utilities"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+groups = ["main", "dev"]
 files = [
     {file = "six-1.17.0-py2.py3-none-any.whl", hash = "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274"},
     {file = "six-1.17.0.tar.gz", hash = "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"},
@@ -3284,6 +3457,7 @@ version = "2.2.0"
 description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms."
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "snowballstemmer-2.2.0-py2.py3-none-any.whl", hash = "sha256:c8e1716e83cc398ae16824e5572ae04e0d9fc2c6b985fb0f900f5f0c96ecba1a"},
     {file = "snowballstemmer-2.2.0.tar.gz", hash = "sha256:09b16deb8547d3412ad7b590689584cd0fe25ec8db3be37788be3810cbf19cb1"},
@@ -3295,6 +3469,7 @@ version = "2.4.0"
 description = "Sorted Containers -- Sorted List, Sorted Dict, Sorted Set"
 optional = false
 python-versions = "*"
+groups = ["main", "dev"]
 files = [
     {file = "sortedcontainers-2.4.0-py2.py3-none-any.whl", hash = "sha256:a163dcaede0f1c021485e957a39245190e74249897e2ae4b2aa38595db237ee0"},
     {file = "sortedcontainers-2.4.0.tar.gz", hash = "sha256:25caa5a06cc30b6b83d11423433f65d1f9d76c4c6a0c90e3379eaa43b9bfdb88"},
@@ -3306,6 +3481,7 @@ version = "2.7"
 description = "A modern CSS selector implementation for Beautiful Soup."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "soupsieve-2.7-py3-none-any.whl", hash = "sha256:6e60cc5c1ffaf1cebcc12e8188320b72071e922c2e897f737cadce79ad5d30c4"},
     {file = "soupsieve-2.7.tar.gz", hash = "sha256:ad282f9b6926286d2ead4750552c8a6142bc4c783fd66b0293547c8fe6ae126a"},
@@ -3317,6 +3493,7 @@ version = "0.5.1"
 description = "SPARQL Slurper for rdflib"
 optional = false
 python-versions = ">=3.7.4"
+groups = ["main"]
 files = [
     {file = "sparqlslurper-0.5.1-py3-none-any.whl", hash = "sha256:ae49b2d8ce3dd38df7a40465b228ad5d33fb7e11b3f248d195f9cadfc9cfff87"},
     {file = "sparqlslurper-0.5.1.tar.gz", hash = "sha256:9282ebb064fc6152a58269d194cb1e7b275b0f095425a578d75b96dcc851f546"},
@@ -3333,6 +3510,7 @@ version = "2.0.0"
 description = "SPARQL Endpoint interface to Python"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "SPARQLWrapper-2.0.0-py3-none-any.whl", hash = "sha256:c99a7204fff676ee28e6acef327dc1ff8451c6f7217dcd8d49e8872f324a8a20"},
     {file = "SPARQLWrapper-2.0.0.tar.gz", hash = "sha256:3fed3ebcc77617a4a74d2644b86fd88e0f32e7f7003ac7b2b334c026201731f1"},
@@ -3353,6 +3531,7 @@ version = "8.1.3"
 description = "Python documentation generator"
 optional = false
 python-versions = ">=3.10"
+groups = ["main"]
 files = [
     {file = "sphinx-8.1.3-py3-none-any.whl", hash = "sha256:09719015511837b76bf6e03e42eb7595ac8c2e41eeb9c29c5b755c6b677992a2"},
     {file = "sphinx-8.1.3.tar.gz", hash = "sha256:43c1911eecb0d3e161ad78611bc905d1ad0e523e4ddc202a58a821773dc4c927"},
@@ -3388,6 +3567,7 @@ version = "3.0.0"
 description = "Read the Docs theme for Sphinx"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "sphinx_rtd_theme-3.0.0-py2.py3-none-any.whl", hash = "sha256:1ffe1539957775bfa0a7331370de7dc145b6eac705de23365dc55c5d94bb08e7"},
     {file = "sphinx_rtd_theme-3.0.0.tar.gz", hash = "sha256:905d67de03217fd3d76fbbdd992034ac8e77044ef8063a544dda1af74d409e08"},
@@ -3407,6 +3587,7 @@ version = "2.0.0"
 description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "sphinxcontrib_applehelp-2.0.0-py3-none-any.whl", hash = "sha256:4cd3f0ec4ac5dd9c17ec65e9ab272c9b867ea77425228e68ecf08d6b28ddbdb5"},
     {file = "sphinxcontrib_applehelp-2.0.0.tar.gz", hash = "sha256:2f29ef331735ce958efa4734873f084941970894c6090408b079c61b2e1c06d1"},
@@ -3423,6 +3604,7 @@ version = "2.0.0"
 description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "sphinxcontrib_devhelp-2.0.0-py3-none-any.whl", hash = "sha256:aefb8b83854e4b0998877524d1029fd3e6879210422ee3780459e28a1f03a8a2"},
     {file = "sphinxcontrib_devhelp-2.0.0.tar.gz", hash = "sha256:411f5d96d445d1d73bb5d52133377b4248ec79db5c793ce7dbe59e074b4dd1ad"},
@@ -3439,6 +3621,7 @@ version = "2.1.0"
 description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl", hash = "sha256:166759820b47002d22914d64a075ce08f4c46818e17cfc9470a9786b759b19f8"},
     {file = "sphinxcontrib_htmlhelp-2.1.0.tar.gz", hash = "sha256:c9e2916ace8aad64cc13a0d233ee22317f2b9025b9cf3295249fa985cc7082e9"},
@@ -3455,6 +3638,7 @@ version = "4.1"
 description = "Extension to include jQuery on newer Sphinx releases"
 optional = false
 python-versions = ">=2.7"
+groups = ["main"]
 files = [
     {file = "sphinxcontrib-jquery-4.1.tar.gz", hash = "sha256:1620739f04e36a2c779f1a131a2dfd49b2fd07351bf1968ced074365933abc7a"},
     {file = "sphinxcontrib_jquery-4.1-py2.py3-none-any.whl", hash = "sha256:f936030d7d0147dd026a4f2b5a57343d233f1fc7b363f68b3d4f1cb0993878ae"},
@@ -3469,6 +3653,7 @@ version = "1.0.1"
 description = "A sphinx extension which renders display math in HTML via JavaScript"
 optional = false
 python-versions = ">=3.5"
+groups = ["main"]
 files = [
     {file = "sphinxcontrib-jsmath-1.0.1.tar.gz", hash = "sha256:a9925e4a4587247ed2191a22df5f6970656cb8ca2bd6284309578f2153e0c4b8"},
     {file = "sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl", hash = "sha256:2ec2eaebfb78f3f2078e73666b1415417a116cc848b72e5172e596c871103178"},
@@ -3483,6 +3668,7 @@ version = "2.0.0"
 description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "sphinxcontrib_qthelp-2.0.0-py3-none-any.whl", hash = "sha256:b18a828cdba941ccd6ee8445dbe72ffa3ef8cbe7505d8cd1fa0d42d3f2d5f3eb"},
     {file = "sphinxcontrib_qthelp-2.0.0.tar.gz", hash = "sha256:4fe7d0ac8fc171045be623aba3e2a8f613f8682731f9153bb2e40ece16b9bbab"},
@@ -3499,6 +3685,7 @@ version = "2.0.0"
 description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl", hash = "sha256:6e2cb0eef194e10c27ec0023bfeb25badbbb5868244cf5bc5bdc04e4464bf331"},
     {file = "sphinxcontrib_serializinghtml-2.0.0.tar.gz", hash = "sha256:e9d912827f872c029017a53f0ef2180b327c3f7fd23c87229f7a8e8b70031d4d"},
@@ -3515,6 +3702,7 @@ version = "2.0.40"
 description = "Database Abstraction Library"
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "dev"]
 files = [
     {file = "SQLAlchemy-2.0.40-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:ae9597cab738e7cc823f04a704fb754a9249f0b6695a6aeb63b74055cd417a96"},
     {file = "SQLAlchemy-2.0.40-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:37a5c21ab099a83d669ebb251fddf8f5cee4d75ea40a5a1653d9c43d60e20867"},
@@ -3610,6 +3798,7 @@ version = "1.0.1"
 description = ""
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "stemming-1.0.1.tar.gz", hash = "sha256:59678702e1d06caffecee82910f048edf12ad89dcf430776b4b05bfb8850bc51"},
     {file = "stemming-1.0.1.zip", hash = "sha256:3a812fbe64a8c74e95651f5a48bae3a7a47282aa58cd5a61f3384e73674ac23d"},
@@ -3621,6 +3810,7 @@ version = "3.6.0"
 description = "threadpoolctl"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "threadpoolctl-3.6.0-py3-none-any.whl", hash = "sha256:43a0b8fd5a2928500110039e43a5eed8480b918967083ea48dc3ab9f13c4a7fb"},
     {file = "threadpoolctl-3.6.0.tar.gz", hash = "sha256:8ab8b4aa3491d812b623328249fab5302a68d2d71745c8a4c719a2fcaba9f44e"},
@@ -3632,6 +3822,8 @@ version = "2.2.1"
 description = "A lil' TOML parser"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
+markers = "python_version < \"3.11\""
 files = [
     {file = "tomli-2.2.1-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:678e4fa69e4575eb77d103de3df8a895e1591b48e740211bd1067378c69e8249"},
     {file = "tomli-2.2.1-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:023aa114dd824ade0100497eb2318602af309e5a55595f76b626d6d9f3b7b0a6"},
@@ -3673,6 +3865,7 @@ version = "4.20.0"
 description = "tox is a generic virtualenv management and test command line tool"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "tox-4.20.0-py3-none-any.whl", hash = "sha256:21a8005e3d3fe5658a8e36b8ca3ed13a4230429063c5cc2a2fdac6ee5aa0de34"},
     {file = "tox-4.20.0.tar.gz", hash = "sha256:5b78a49b6eaaeab3ae4186415e7c97d524f762ae967c63562687c3e5f0ec23d5"},
@@ -3692,7 +3885,7 @@ virtualenv = ">=20.26.3"
 
 [package.extras]
 docs = ["furo (>=2024.8.6)", "sphinx (>=8.0.2)", "sphinx-argparse-cli (>=1.17)", "sphinx-autodoc-typehints (>=2.4)", "sphinx-copybutton (>=0.5.2)", "sphinx-inline-tabs (>=2023.4.21)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=24.8)"]
-testing = ["build[virtualenv] (>=1.2.2)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.2)", "devpi-process (>=1)", "diff-cover (>=9.1.1)", "distlib (>=0.3.8)", "flaky (>=3.8.1)", "hatch-vcs (>=0.4)", "hatchling (>=1.25)", "psutil (>=6)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-xdist (>=3.6.1)", "re-assert (>=1.1)", "setuptools (>=74.1.2)", "time-machine (>=2.15)", "wheel (>=0.44)"]
+testing = ["build[virtualenv] (>=1.2.2)", "covdefaults (>=2.3)", "detect-test-pollution (>=1.2)", "devpi-process (>=1)", "diff-cover (>=9.1.1)", "distlib (>=0.3.8)", "flaky (>=3.8.1)", "hatch-vcs (>=0.4)", "hatchling (>=1.25)", "psutil (>=6)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-xdist (>=3.6.1)", "re-assert (>=1.1)", "setuptools (>=74.1.2)", "time-machine (>=2.15) ; implementation_name != \"pypy\"", "wheel (>=0.44)"]
 
 [[package]]
 name = "tqdm"
@@ -3700,6 +3893,7 @@ version = "4.67.1"
 description = "Fast, Extensible Progress Meter"
 optional = false
 python-versions = ">=3.7"
+groups = ["main", "dev"]
 files = [
     {file = "tqdm-4.67.1-py3-none-any.whl", hash = "sha256:26445eca388f82e72884e0d580d5464cd801a3ea01e63e5601bdff9ba6a48de2"},
     {file = "tqdm-4.67.1.tar.gz", hash = "sha256:f8aef9c52c08c13a65f30ea34f4e5aac3fd1a34959879d7e59e63027286627f2"},
@@ -3721,6 +3915,7 @@ version = "4.4.2"
 description = "Run-time type checker for Python"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "typeguard-4.4.2-py3-none-any.whl", hash = "sha256:77a78f11f09777aeae7fa08585f33b5f4ef0e7335af40005b0c422ed398ff48c"},
     {file = "typeguard-4.4.2.tar.gz", hash = "sha256:a6f1065813e32ef365bc3b3f503af8a96f9dd4e0033a02c28c4a4983de8c6c49"},
@@ -3731,7 +3926,7 @@ typing_extensions = ">=4.10.0"
 
 [package.extras]
 doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme (>=1.3.0)"]
-test = ["coverage[toml] (>=7)", "mypy (>=1.2.0)", "pytest (>=7)"]
+test = ["coverage[toml] (>=7)", "mypy (>=1.2.0) ; platform_python_implementation != \"PyPy\"", "pytest (>=7)"]
 
 [[package]]
 name = "types-python-dateutil"
@@ -3739,6 +3934,7 @@ version = "2.9.0.20241206"
 description = "Typing stubs for python-dateutil"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "types_python_dateutil-2.9.0.20241206-py3-none-any.whl", hash = "sha256:e248a4bc70a486d3e3ec84d0dc30eec3a5f979d6e7ee4123ae043eedbb987f53"},
     {file = "types_python_dateutil-2.9.0.20241206.tar.gz", hash = "sha256:18f493414c26ffba692a72369fea7a154c502646301ebfe3d56a04b3767284cb"},
@@ -3750,6 +3946,7 @@ version = "78.1.0.20250329"
 description = "Typing stubs for setuptools"
 optional = false
 python-versions = ">=3.9"
+groups = ["dev"]
 files = [
     {file = "types_setuptools-78.1.0.20250329-py3-none-any.whl", hash = "sha256:ea47eab891afb506f470eee581dcde44d64dc99796665da794da6f83f50f6776"},
     {file = "types_setuptools-78.1.0.20250329.tar.gz", hash = "sha256:31e62950c38b8cc1c5114b077504e36426860a064287cac11b9666ab3a483234"},
@@ -3764,6 +3961,7 @@ version = "4.13.2"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "typing_extensions-4.13.2-py3-none-any.whl", hash = "sha256:a439e7c04b49fec3e5d3e2beaa21755cadbbdc391694e28ccdd36ca4a1408f8c"},
     {file = "typing_extensions-4.13.2.tar.gz", hash = "sha256:e6c81219bd689f51865d9e372991c540bda33a0379d5573cddb9a3a23f7caaef"},
@@ -3775,6 +3973,7 @@ version = "0.4.0"
 description = "Runtime typing introspection tools"
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "typing_inspection-0.4.0-py3-none-any.whl", hash = "sha256:50e72559fcd2a6367a19f7a7e610e6afcb9fac940c650290eed893d61386832f"},
     {file = "typing_inspection-0.4.0.tar.gz", hash = "sha256:9765c87de36671694a67904bf2c96e395be9c6439bb6c87b5142569dcdd65122"},
@@ -3789,6 +3988,7 @@ version = "2025.2"
 description = "Provider of IANA time zone data"
 optional = false
 python-versions = ">=2"
+groups = ["main", "dev"]
 files = [
     {file = "tzdata-2025.2-py2.py3-none-any.whl", hash = "sha256:1a403fada01ff9221ca8044d701868fa132215d84beb92242d9acd2147f667a8"},
     {file = "tzdata-2025.2.tar.gz", hash = "sha256:b60a638fcc0daffadf82fe0f57e53d06bdec2f36c4df66280ae79bce6bd6f2b9"},
@@ -3800,6 +4000,7 @@ version = "1.3.0"
 description = "RFC 6570 URI Template Processor"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"},
     {file = "uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363"},
@@ -3814,13 +4015,14 @@ version = "2.4.0"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
 python-versions = ">=3.9"
+groups = ["main", "dev"]
 files = [
     {file = "urllib3-2.4.0-py3-none-any.whl", hash = "sha256:4e16665048960a0900c702d4a66415956a584919c03361cac9f1df5c5dd7e813"},
     {file = "urllib3-2.4.0.tar.gz", hash = "sha256:414bc6535b787febd7567804cc015fee39daab8ad86268f1310a9250697de466"},
 ]
 
 [package.extras]
-brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
+brotli = ["brotli (>=1.0.9) ; platform_python_implementation == \"CPython\"", "brotlicffi (>=0.8.0) ; platform_python_implementation != \"CPython\""]
 h2 = ["h2 (>=4,<5)"]
 socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
 zstd = ["zstandard (>=0.18.0)"]
@@ -3831,6 +4033,7 @@ version = "20.30.0"
 description = "Virtual Python Environment builder"
 optional = false
 python-versions = ">=3.8"
+groups = ["dev"]
 files = [
     {file = "virtualenv-20.30.0-py3-none-any.whl", hash = "sha256:e34302959180fca3af42d1800df014b35019490b119eba981af27f2fa486e5d6"},
     {file = "virtualenv-20.30.0.tar.gz", hash = "sha256:800863162bcaa5450a6e4d721049730e7f2dae07720e0902b0e4040bd6f9ada8"},
@@ -3843,7 +4046,7 @@ platformdirs = ">=3.9.1,<5"
 
 [package.extras]
 docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2,!=7.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
-test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"]
+test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8) ; platform_python_implementation == \"PyPy\" or platform_python_implementation == \"GraalVM\" or platform_python_implementation == \"CPython\" and sys_platform == \"win32\" and python_version >= \"3.13\"", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10) ; platform_python_implementation == \"CPython\""]
 
 [[package]]
 name = "watchdog"
@@ -3851,6 +4054,7 @@ version = "6.0.0"
 description = "Filesystem events monitoring"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "watchdog-6.0.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:d1cdb490583ebd691c012b3d6dae011000fe42edb7a82ece80965b42abd61f26"},
     {file = "watchdog-6.0.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:bc64ab3bdb6a04d69d4023b29422170b74681784ffb9463ed4870cf2f3e66112"},
@@ -3893,6 +4097,7 @@ version = "24.11.1"
 description = "A library for working with the color formats defined by HTML and CSS."
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "webcolors-24.11.1-py3-none-any.whl", hash = "sha256:515291393b4cdf0eb19c155749a096f779f7d909f7cceea072791cb9095b92e9"},
     {file = "webcolors-24.11.1.tar.gz", hash = "sha256:ecb3d768f32202af770477b8b65f318fa4f566c22948673a977b00d589dd80f6"},
@@ -3904,6 +4109,7 @@ version = "1.4.0"
 description = "Wikipedia API for Python"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "wikipedia-1.4.0.tar.gz", hash = "sha256:db0fad1829fdd441b1852306e9856398204dc0786d2996dd2e0c8bb8e26133b2"},
 ]
@@ -3918,6 +4124,7 @@ version = "1.17.2"
 description = "Module for decorators, wrappers and monkey patching."
 optional = false
 python-versions = ">=3.8"
+groups = ["main", "dev"]
 files = [
     {file = "wrapt-1.17.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:3d57c572081fed831ad2d26fd430d565b76aa277ed1d30ff4d40670b1c0dd984"},
     {file = "wrapt-1.17.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:b5e251054542ae57ac7f3fba5d10bfff615b6c2fb09abeb37d2f1463f841ae22"},
@@ -4001,6 +4208,6 @@ files = [
 ]
 
 [metadata]
-lock-version = "2.0"
+lock-version = "2.1"
 python-versions = "^3.10"
-content-hash = "15f4a19d5b34822a1522ed68afd4e0967e10b30317fafdbfc1b8a08a0bd52708"
+content-hash = "ae2117db4f2e82982ebdd3c75274270564c0cd1dd0b18f1420792a4bcced28d7"
diff --git a/pyproject.toml b/pyproject.toml
index ff9f470..23cf2b1 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -49,6 +49,7 @@ pyyaml = "^6.0" # to humor deptry
 quantulum3 = { extras = ["classifier"], version = "^0.9.2" }
 recommonmark = "^0.7.1"
 sphinx-rtd-theme = "3.0"
+deepdiff = "^8.4.2"
 
 
 [tool.poetry.group.dev.dependencies]
diff --git a/sample_annotator/json_diff.py b/sample_annotator/json_diff.py
new file mode 100644
index 0000000..0962fc9
--- /dev/null
+++ b/sample_annotator/json_diff.py
@@ -0,0 +1,56 @@
+import json
+from pathlib import Path
+
+import click
+from deepdiff import DeepDiff
+
+
+def load_json(path: Path):
+    with path.open() as f:
+        return json.load(f)
+
+
+def normalize(obj):
+    """
+    Recursively normalize JSON-like object:
+    - Sort dict keys
+    - Sort lists if homogeneous and sortable
+    """
+    if isinstance(obj, dict):
+        return {k: normalize(obj[k]) for k in sorted(obj)}
+    elif isinstance(obj, list):
+        if all(isinstance(el, dict) for el in obj):
+            return sorted((normalize(el) for el in obj), key=lambda x: json.dumps(x, sort_keys=True))
+        try:
+            return sorted(normalize(el) for el in obj)
+        except TypeError:
+            return [normalize(el) for el in obj]
+    else:
+        return obj
+
+
+@click.command()
+@click.option("--file1", type=click.Path(exists=True, path_type=Path), required=True,
+              help="First JSON file to compare.")
+@click.option("--file2", type=click.Path(exists=True, path_type=Path), required=True,
+              help="Second JSON file to compare.")
+@click.option("--show-diff", is_flag=True, help="Print the DeepDiff if files differ.")
+def compare(file1: Path, file2: Path, show_diff: bool):
+    """Compare two JSON files for semantic equivalence."""
+    data1 = load_json(file1)
+    data2 = load_json(file2)
+
+    normalized1 = normalize(data1)
+    normalized2 = normalize(data2)
+
+    if normalized1 == normalized2:
+        click.echo("✅ Files are semantically equivalent.")
+    else:
+        click.echo("❌ Files differ.")
+        if show_diff:
+            diff = DeepDiff(normalized1, normalized2, verbose_level=2)
+            click.echo(diff.pretty())
+
+
+if __name__ == "__main__":
+    compare()