fix: prevent refresh coordinator deadlock and reset missing-env reporting on reconfigure #1391

Job	Run time
Tests in Containers (ci-homebrew-container, ubuntu-latest, homebrew/brew, x86_64-unknown-linux-musl)	3m 49s
Tests (macos-latest, x86_64-apple-darwin, yes)	14m 10s
Builds (ubuntu-latest, x86_64-unknown-linux-musl, yes)	2m 23s
Builds (windows-latest, x86_64-pc-windows-msvc)	6m 29s
Tests in Containers (ci-jupyter-container, ubuntu-latest, mcr.microsoft.com/devcontainers/univers...	4m 41s
Builds (macos-latest, x86_64-apple-darwin, yes)	3m 18s
Env Tests (ci-poetry-custom, windows-latest, x86_64-pc-windows-msvc)	6m 31s
Env Tests (ci-poetry-global, ubuntu-latest, x86_64-unknown-linux-musl)	2m 55s
Tests (macos-14, aarch64-apple-darwin, yes)	10m 58s
Tests (windows-latest, x86_64-pc-windows-msvc, yes)	7m 55s
Env Tests (ci-poetry-project, ubuntu-latest, x86_64-unknown-linux-musl)	2m 53s
Builds (macos-14, aarch64-apple-darwin, yes)	3m 10s
Builds (windows-latest, aarch64-pc-windows-msvc)	5m 26s
Tests (ubuntu-latest, x86_64-unknown-linux-musl, yes)	9m 22s
Env Tests (ci-poetry-global, windows-latest, x86_64-pc-windows-msvc)	7m 0s
Env Tests (ci-poetry-project, windows-latest, x86_64-pc-windows-msvc)	6m 3s
Env Tests (ci-poetry-custom, ubuntu-latest, x86_64-unknown-linux-musl)	2m 50s
	1h 39m 53s

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