DNAmArray/NAMESPACE at master · molepi/DNAmArray · GitHub

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# Generated by roxygen2: do not edit by hand

export(.gcscatterplot)
export(DMRfinder)
export(cpgInfo)
export(getSex.DNAmArray)
export(get_outliers)
export(plotBS)
export(plotDP)
export(plotHC)
export(plotMU)
export(plotOP)
export(preprocessFunnorm.DNAmArray)
export(probeFiltering)
export(probeMasking)
export(read.metharray.exp.par)
export(reduce)
export(screeplot)
import(FDb.InfiniumMethylation.hg19)
import(GenomicRanges)
import(ggplot2)
import(htm2txt)
import(minfi)
import(org.Hs.eg.db)
importFrom(AnnotationDbi,select)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,annotation)
importFrom(Biobase,assayDataElement)
importFrom(Biobase,combine)
importFrom(Biobase,experimentData)
importFrom(Biobase,featureData)
importFrom(Biobase,phenoData)
importFrom(Biobase,protocolData)
importFrom(Biobase,varMetadata)
importFrom(BiocParallel,bplapply)
importFrom(BiocParallel,bpparam)
importFrom(BiocParallel,bpworkers)
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(GenomicFeatures,features)
importFrom(IRanges,IRanges)
importFrom(SummarizedExperiment,"assay<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,updateObject)
importFrom(graphics,barplot)
importFrom(readr,read_tsv)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,pnorm)
importFrom(stats,prcomp)
importFrom(utils,data)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,str)
importFrom(utils,txtProgressBar)
importFrom(ggrepel, geom_text_repel)
importFrom(pls, plsr)
importFrom(tibble, column_to_rownames, rownames_to_column)
importFrom(tidyr, pivot_wider)
importFrom(stats, na.omit, prcomp)
importFrom(utils, unstack)