ARGPrism_dev/meta.yaml at dev · muneebdev7/ARGPrism_dev · GitHub

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package:
  name: argprism
  version: "1.0.0"

source:
  path: .

build:
  number: 0
  script: python -m pip install . -vv
  skip: true  # [not linux]

requirements:
  host:
    - python >=3.13,<3.14
    - pip
    - setuptools
    - wheel
  run:
    - python >=3.13,<3.14
    - numpy ==2.2.3
    - pandas ==2.2.3
    - scipy ==1.15.2
    - scikit-learn ==1.6.1
    - biopython ==1.85
    - h5py ==3.13.0
    - pytorch ==2.6.0
    - transformers ==4.49.0
    - sentencepiece ==0.2.0
    - matplotlib ==3.10.1
    - seaborn ==0.13.2
    - tqdm ==4.67.1
    - requests ==2.32.3
    - pillow ==11.2.1
    - regex ==2024.11.6
    - boto3 ==1.37.7
    - diamond >=2.1.15

test:
  imports:
    - argprism
  commands:
    - argprism --version

about:
  home: https://github.com/haseebmanzur/ARGPrism
  license: MIT
  license_file: LICENSE
  summary: "ARGprism: Deep Learning-based Antibiotic Resistance Gene Prediction Pipeline"
  description: |
    ARGprism is a comprehensive pipeline for predicting antibiotic resistance genes (ARGs)
    from protein sequences using deep learning. It employs ProtAlbert embeddings and a
    trained neural network classifier, followed by DIAMOND BLAST mapping against a reference
    ARG database for functional annotation.
  dev_url: https://github.com/muneebdev7/ARGPrism_dev
  doc_url: https://github.com/haseebmanzur/ARGPrism/blob/main/README.md

extra:
  recipe-maintainers:
    - muneebdev7