Spectrum's iterator with null values

[jortiz12]

Dear MPDAF community,

I´m having problems when using the various "iterators" describe in the Interface for spectra, images and cubes section.

Making use of a datacube (edge-on galaxy IC 1533, already reduced by S. Comeron), whose white-image is shown below

, the loops using the spectrum's iterator (for instance) fails because some of the spaxels have no flux, as shown in figure above (I think). This is code from the Cube_object section (apologies but can´t insert in code format),

And this is the error I get,

Any quick workaround to get around this issue? I face this issue in other parts of the tutorial where iterators are used too.

Needless to say, many thanks in advance.

Kind Regards,
Jose

[saimn]

You could skip the spectra that are entirely masked (e.g. with sp.mask.all()).

[jortiz12]

Thanks Simon.
I'd appreciate if could show mw how to modify this piece of code taking into account your suggestion.

cont1 = obj1.clone(data_init=np.empty, var_init=np.zeros)
for sp, co in zip(iter_spe(obj1), iter_spe(cont1)):
co[:] = sp.poly_spec(5)