When trying to do preprocessing with Pypreprocess I encountered the error:
Traceback (most recent call last):
File "preproc.py", line 71, in <module>
caching=True,
File "/home/bnguyen/build/dev_env_1/lib/python3.6/site-packages/pypreprocess/nipype_preproc_spm_utils.py", line 1445, in do_subject_preproc
**kwargs.get("interface_normalize", {}))
File "/home/bnguyen/build/dev_env_1/lib/python3.6/site-packages/pypreprocess/nipype_preproc_spm_utils.py", line 858, in _do_subject_normalize
write_bounding_box=write_bounding_box,
NameError: name 'write_bounding_box' is not defined
Apparently in the commit 47b5149#diff-3eb7a5e605c5b2a38cb0f366d23052a6 the default value for the paramter write_bounding_box is removed by @AGrigis . I can create a PR for this but I don't really know what should be the default value of this parameter (the last default value is [[-78, -112, -50], [78, 76, 85]] but has been commented out before this commit.
When trying to do preprocessing with Pypreprocess I encountered the error:
Apparently in the commit 47b5149#diff-3eb7a5e605c5b2a38cb0f366d23052a6 the default value for the paramter
write_bounding_boxis removed by @AGrigis . I can create a PR for this but I don't really know what should be the default value of this parameter (the last default value is[[-78, -112, -50], [78, 76, 85]]but has been commented out before this commit.